| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,665,870 – 7,665,980 |
| Length | 110 |
| Max. P | 0.811189 |
| Location | 7,665,870 – 7,665,980 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.46 |
| Mean single sequence MFE | -35.90 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.47 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7665870 110 + 27905053 ---AACCCAGGCGACUUGUUGGCCCAACCCCAAUCCCAUAAAGAAGUCUGAGAAAAGA-------AAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUUUUGUUCGUA ---(((..(((((((..(((((((((.(((((.((.......))..(((......)))-------..)))))....((((((....))))))..))))))))).)))))))..))).... ( -30.30) >DroSec_CAF1 20975 112 + 1 ---AACCCAGACGACUUGUUGGCCAA-----AAACCCAUAAAGAAGUAUGAGGAAAGAAGGCUAAAAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUUUUGUUCGUA ---(((..(((((((..(((((((..-----...((((((......)))).))....((((((((((..(....)..)))))))))).........))))))).)))))))..))).... ( -36.50) >DroSim_CAF1 20648 117 + 1 ---AACCCAGACGACUUGUUGGCCCAAUCCCAAUCCCAUAAAGAAGUAUGAGGAAAGAAGGCUCAAAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUUUUGUUCGUA ---(((..(((((((..(((((((((.......(((((((......)))).)))...((((((.(((..(....)..))).)))))).......))))))))).)))))))..))).... ( -38.20) >DroEre_CAF1 21265 120 + 1 GUCAACCCAGACGACUUGUUGGCCCAAUCCCAAUCCCAUAAAGAAGUCCGAGGAAACAGGGCUUAAAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUGUUGCUCGUA (.((((...((((((..(((((((((.......((((((....((((((..(....).))))))..))))))....((((((....))))))..))))))))).)))))))))))..... ( -40.90) >DroYak_CAF1 20498 120 + 1 GUCAACCCAGACGACUUGUUGGCCCAAUCCCAAUCCCAUAAAGAAGUCUGAGGAAACAAGGCUAAAAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUUUUGUUCGUA ...(((..(((((((..(((((((((.......(((((..........)).)))...((((((((((..(....)..)))))))))).......))))))))).)))))))..))).... ( -38.80) >DroAna_CAF1 23874 109 + 1 CUCAACCCUAGCGACUUGUUAGCCCAAUCCC----UCAGAAAGGCAACGU------CGAGGC-CAAAUGGAGAAUUGUUUUGGCCCCAAAAUUGUGGGUCAAUAGUUGUUCUUGUUGGUG .(((((...(((((((.(((..((((.....----.......(....)..------.(.(((-((((...........))))))).).......))))..))))))))))...))))).. ( -30.70) >consensus ___AACCCAGACGACUUGUUGGCCCAAUCCCAAUCCCAUAAAGAAGUCUGAGGAAACAAGGCUAAAAUGGGGAAUUGUUUUAGCCUUAAAAUUGUGGGUCAAUUGUCGUUUUUGUUCGUA .........((((((..(((((((((..........(.....)..............((((((.(((..(....)..))).)))))).......))))))))).)))))).......... (-22.66 = -23.47 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:17 2006