Locus 285

Sequence ID 3R_DroMel_CAF1
Location 1,108,366 – 1,108,485
Length 119
Max. P 0.619233
window486

overview

Window 6

Location 1,108,366 – 1,108,485
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.29
Mean single sequence MFE -46.82
Consensus MFE -26.29
Energy contribution -27.15
Covariance contribution 0.86
Combinations/Pair 1.26
Mean z-score -1.81
Structure conservation index 0.56
SVM decision value 0.17
SVM RNA-class probability 0.619233
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1108366 119 + 27905053
-CGAUCCUGACCGGCACUCACCGUUUCGUGCAUUUCGCCGCUCUCGUCGAGGAGAGCCUCCAGGCUCUGGUCGUCCUUGGUGGGCGAGAGAGGGGGCGUGGGCGCGCGGUUCUUGGCCGA
-..........((((....((((...(((((....((((.(((((.((....((((((....))))))..((((((.....)))))))))))))))))...))))))))).....)))). ( -55.20)
>DroVir_CAF1 35748 115 + 1
-UGCU----CUUCCCACUCACCGUUUCAUGCAUUUCGCCGCUUUCAUCUAGCAACGCCUCCAAGCUCUGAUCGUCUUUGGUUGGCGAGAGCGGCGGCGUGGGCGAGCGAUUCUUGGCCGU
-.(((----(..(((((.....((.....))...(((((((((((.....(...)(((.(((((..(.....)..)))))..)))))))))))))).))))).))))............. ( -40.90)
>DroGri_CAF1 48643 119 + 1
-UGAUUCUGUUUCCCACUCACCGUUUCAUGCAUUUCGCUGCUUUCGUCGAGCAACGCCUCCAAGCUCUGAUCAUCUUUGGUAGGCGAGAGCGGCGGCGUCGGUGAGCGAUUUUUCGCCGU
-................((((((....((((....(((((((((((((((((...........))))..((((....)))).)))))))))))))))))))))))((((....))))... ( -44.20)
>DroWil_CAF1 44449 110 + 1
----------UCAAAACUCACCGUUUCAUGCAUUUCACCGCUCUCGUCGAGCAGUGCCUCCAGACUCUGAUCAUCCUUGGUGGGUGAUAGAGGCGGUGUGGGUGCACGAUUUUUGGCCGA
----------..........(((..((.(((((((((((((((.....))))...((((((((...)))(((((((.....))))))).))))))))).))))))).))....))).... ( -40.30)
>DroMoj_CAF1 37631 115 + 1
-UGCU----CUACCCACUCACCGUUUCAUGCAUUUCACCGCUUUCGUCGAGCAAUGCCUCCAAGCUCUGAUCAUCUUUGGUGGGCGAGAGCGGCGGUGUGGGCGAGCGAUUCUUGACUGA
-.(((----(..(((((..(((((.....))......(((((((((((((((...........))))..((((....)))).))))))))))).)))))))).))))............. ( -42.60)
>DroAna_CAF1 40550 116 + 1
UCGAUC--GACUG--ACUCACCGUUUCGUGCAUUUCUCCGCUCUCAUCGAGCAGCGCCUCCAGGCUCUGGUCGUCCUUGGUGGGCGAGAGUGGGGGCGUGGGCGAGCGGUUUUUGGCGGC
....((--(.(..--(...((((((.(((.(((.(((((((((((...((.(((.(((....))).))).))((((.....))))))))))))))).))).)))))))))..)..)))). ( -57.70)
>consensus
_UGAU____AUUCCCACUCACCGUUUCAUGCAUUUCGCCGCUCUCGUCGAGCAACGCCUCCAAGCUCUGAUCAUCCUUGGUGGGCGAGAGCGGCGGCGUGGGCGAGCGAUUCUUGGCCGA
.....................((((.(((.(((.((.(((((((((((((((...........))))..((((....)))).))))))))))).)).))).)))))))............ (-26.29 = -27.15 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006