| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,654,017 – 7,654,118 |
| Length | 101 |
| Max. P | 0.728851 |
| Location | 7,654,017 – 7,654,118 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.32 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7654017 101 + 27905053 GCUCUUACCGGUUU-UUCGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUCGAGAAGGGAAGGGUUGCAGGGAGGGGGCGAGGUGGUUGUUUGGGUGAGAA ..(((((((.((((-(((.....)))))))...(((.((((((((.(((..(.....)..))).........).))))))).))).........))))))). ( -38.90) >DroSec_CAF1 9050 90 + 1 GCUCUUACCGGUUUUUUUGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUCGAGAAGGGAUGGGUUG------------GAGGUGGUUGUUUGGGUGAGAA ..(((((((.(((((((......)))))))...(((((.((.(((((((((....))))).))))..)------------)..)))))......))))))). ( -30.60) >DroSim_CAF1 8702 89 + 1 GCUCUUACCGGUUU-UUCGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUCGAGAAGGGAUGGGUUG------------GAGGUGGUUGUUUGGGUGAGAA ..(((((((.((((-(((.....)))))))...(((((.((.(((((((((....))))).))))..)------------)..)))))......))))))). ( -31.80) >DroEre_CAF1 8872 83 + 1 GCUCUUACCGGUUU-UUCGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUUGAGAAGGGUGGGGGAU------GAG---AACG---------GGGUGAGAA ..((((((((((..-.((((........)))).))).((.(((((((((((....))))))))))).)------)..---....---------.))))))). ( -37.30) >DroYak_CAF1 8659 91 + 1 GCUCUUACCGGUUU-UUCGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUUGAGAAG-GUGGAGGAA------GGG---GAGGGGCGGGUUUGGGUGAGAA ..((((((((((..-.((((........)))).))).((((((((.((((((......-....)))))------).)---).))))))......))))))). ( -38.40) >consensus GCUCUUACCGGUUU_UUCGCACUGAAAGGCGAUGCCACGCCCCCCACUUUUCGAGAAGGGAGGGGUUG______G_G___GAGGUGGUUGUUUGGGUGAGAA ..((((((((((....((((........)))).)))....(((((.((((....))))))..))).............................))))))). (-22.08 = -22.32 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:07 2006