Locus 2846

Sequence ID 3R_DroMel_CAF1
Location 7,650,316 – 7,650,436
Length 120
Max. P 0.539871
window4599

overview

Window 9

Location 7,650,316 – 7,650,436
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.72
Mean single sequence MFE -41.43
Consensus MFE -30.33
Energy contribution -31.22
Covariance contribution 0.89
Combinations/Pair 1.29
Mean z-score -2.00
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.539871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7650316 120 - 27905053
UUAUGCCCGAACAGGUGGAGGUGCUGAUCUUCACGGGCAACCGGAUCACUGAGCUGCCGUGGAAUGUCUUUGGCAGCAUCAACAACUACAAGCAGCUGCGCAUCGUGGACAUGAGCAGCA
((((((((((....(((.((.((((((((....(((....)))))))..((((((((((.((.....)).))))))).))).........)))).)).))).))).)).)))))...... ( -46.40)
>DroVir_CAF1 6248 120 - 1
ACAUGCCCGAGCAGGUGGAGAUACUUAUCUUUACGGGCAACUACAUUACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAGCA
...((((((...((((((......))))))...)))))).............(((((((((..(((((((..((.((..............)).))..)))).)))...)))).))))). ( -41.34)
>DroPse_CAF1 6494 120 - 1
UCAUGCCCGAGAAGGUGGAGGUGCUGAUCUUCACCGGCAAUCACAUUGCGGAGCUGCCCUGGAACGUGUUCGGGAGCAUCAACGACUACAAGCAGCUCAAGAUCGUGGACAUGAGCAGCA
((((((((((...(((((((((....))))))))).(((((...))))).(((((((((((((.....))))))(((......).))....)))))))....))).)).)))))...... ( -43.90)
>DroGri_CAF1 5815 120 - 1
UUAUGCCCGAGCAGGUGGAGAUACUCAUCUUUACGGGCAACUUUAUUACCGAGCUGCCGUGGAACGUCUUUGGUAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUCGACAUGAGCAGCA
...((((((...((((((......))))))...)))))).............(((((((((..(((((((..((.((..............)).))..)))).)))...)))).))))). ( -42.84)
>DroMoj_CAF1 5857 120 - 1
ACAUGCCCGAGCAGGUCGAGAUCCUGAUCUUUACGGGAAACUACAUAACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAACA
.(((((((((.((((.......)))).(((((((((....)).(((....(((((((((.((.....)).))))))).)).)))..........).))))))))).)).))))....... ( -36.60)
>DroAna_CAF1 10087 120 - 1
UUAUGCCCGAGCAGGUGGAGGUGCUGAUCUUCACGGGCAACCGAAUUACCGAACUUCCUUGGAAUGUGUUCGGCAGCAUCAACGAUUACAAGCAAUUGCGUAUUGUCGACAUGAGCAGCA
...(((....((..(((..(((((((.......(((....))).....(((((((((....)))...)))))))))))))..((((.....((....)).....)))).)))..)).))) ( -37.50)
>consensus
UCAUGCCCGAGCAGGUGGAGAUGCUGAUCUUCACGGGCAACCACAUUACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAACGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAGCA
...(((((......((((((((....))))))))))))).............(((((((((..(((((((((((.((..............)).)))))))).)))...)))).))))). (-30.33 = -31.22 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006