| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,642,187 – 7,642,291 |
| Length | 104 |
| Max. P | 0.818580 |
| Location | 7,642,187 – 7,642,291 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7642187 104 - 27905053 AUUG--CCAUUCCGA---UGUUAAA-CAAAGAUUGGGGCAACAAUGGCAACUUUGGCGUUGGUGCCAACAACAUGCUGGGCUUCAACAAUCUGCCAAGCCUGAUGAACUC .(((--(((((((((---(.((...-..)).)))))(....)))))))))..((((((....))))))((.((.(((.(((...........))).))).)).))..... ( -31.30) >DroSim_CAF1 19005 104 - 1 AUUG--CCAUUUCGU---UGUUAAA-CUAAGAUUGGGGCAACAACGGCAACUUUGGCGUUGGUGCCAACAACAUGCUAGGCUUCAACAAUCUGCCAAGCCUCAUGAACUC ....--....(((((---((((...-(((....)))((((.(((((.((....)).))))).))))))))))..(((.(((...........))).))).....)))... ( -29.60) >DroEre_CAF1 19411 106 - 1 AUUC--ACUUUGUGU-UUUUUUAAU-CAAAGAUUGGGGCAACAAUGGCAACUUUGGCGUUGGUGCCAACAACAUGCUGGGCUUCAACAAUCUGCCAAGCUUGAUGAAUUC ((((--((((((.((-(.....)))-))))).....((((.(((((.((....)).))))).)))).....((.(((.(((...........))).))).)).))))).. ( -27.40) >DroWil_CAF1 38637 108 - 1 AUUC--ACGUCUCUCUGUUUCCGAUUUCUAGAUUGGGGCAACAACAACAACUUUGGCGUUGGUGCCAACAACAUGUUGGGCUUUAAUAAUUUACCCAGUUUGAUGAACUC .(((--(........((((.((((((....))))))((((.((((..((....))..)))).)))))))).((..(((((.............)))))..)).))))... ( -24.62) >DroYak_CAF1 19105 102 - 1 AUUC--ACUUUGU-----UUUUAAU-CACAGAUUGGGGCAACAACGGCAACUUUGGCGUUGGUGCCAACAACAUGCUGGGCUUCAACAAUCUGCCGAGCCUGAUGAACUC ..((--(.(((((-----.......-.))))).)))((((.(((((.((....)).))))).))))..((.((.(((.(((...........))).))).)).))..... ( -31.20) >DroAna_CAF1 20660 96 - 1 AACCGAUCAUCUUGU--------------AGAUUGGGGAAACAAUGGAAACUUUGGUGUUGGCGCCAACAACAUGUUGGGCUUCAACAAUCUGCCCAGCUUGAUGAACUC ..((((((.......--------------.))))))(....)...(....).((((((....))))))((.((.(((((((...........))))))).)).))..... ( -30.90) >consensus AUUC__ACAUUUCGU___UUUUAAU_CAAAGAUUGGGGCAACAACGGCAACUUUGGCGUUGGUGCCAACAACAUGCUGGGCUUCAACAAUCUGCCAAGCCUGAUGAACUC ....................................((((.(((((.((....)).))))).))))..((.((.(((.(((...........))).))).)).))..... (-19.17 = -19.45 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:05 2006