| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,637,906 – 7,638,002 |
| Length | 96 |
| Max. P | 0.884326 |
| Location | 7,637,906 – 7,638,002 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.10 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -19.33 |
| Energy contribution | -19.34 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7637906 96 + 27905053 --CAAAUCUGAGUCAGGCCAUUACGGCACGGACAUGGCAAAAGCACUCGAAAAA-----------AUGUAUAAACAUGAGUGCACACACAUAUUUGCUCGAACAGAUAA --...(((((.(((..(((.....)))...)))..((((((.((((((......-----------((((....)))))))))).........))))))....))))).. ( -24.80) >DroSec_CAF1 14659 96 + 1 --CAAAUCUGAGUCAGGCCAUUACGGCACGGACUUGGCAAAAGCACUCGAAAAA-----------AUGUAUAAACAUGAGUGCACACACAUAUUUGCUCGAACAGAUAA --.....(..((((..(((.....)))...))))..).....((((((......-----------((((....)))))))))).......((((((......)))))). ( -25.40) >DroSim_CAF1 14769 95 + 1 --CAAAUCUGAGUCAGGCCAUUACGGCACGGACUUGGCAAAAGCACUCGAA-AA-----------AUGUAUAAACAUGAGUGCACACACAUAUUUGCUCGAACAGAUAA --.....(..((((..(((.....)))...))))..).....((((((...-..-----------((((....)))))))))).......((((((......)))))). ( -25.80) >DroEre_CAF1 15002 91 + 1 --CAAAUCUGAGUCAGGCCACUACGGCACGGGCUUCGCAAAACCACUCGAA-AA-----------AUGUAUAAACAUGAGUGCA----CAUAUUUGCUCGAACAGAUAA --...(((((((((..(((.....)))...))))..(((((..(((((...-..-----------((((....)))))))))..----....))))).....))))).. ( -22.20) >DroYak_CAF1 14676 91 + 1 --CAAAUCUGAGUCAGGCCAUUACGGCACGGACUUCGCAAAGGCACUCGAA-AA-----------AUGUAUAAACAUGAGUGCA----CAUAUUUGCUCUAACAGAUAA --...(((((((((..(((.....)))...))))..(((((.((((((...-..-----------((((....)))))))))).----....))))).....))))).. ( -28.70) >DroAna_CAF1 16468 104 + 1 CGCCAAUCUGAGUCAGUUUAUUCUGGCAUGGAUUUUGCAA-GGCACUUGAAAAAAAUAAAUAUAUAUGUAUAAACAUGAGAGCA----CAUAUUUGUUUUAACAGAUAA .(((((((((.(((((......))))).))))))......-)))........(((((((((((.(((((....))))).(....----))))))))))))......... ( -19.30) >consensus __CAAAUCUGAGUCAGGCCAUUACGGCACGGACUUGGCAAAAGCACUCGAA_AA___________AUGUAUAAACAUGAGUGCA____CAUAUUUGCUCGAACAGAUAA .....(((((((((..(((.....)))...))))..(((((.((((((.................((((....)))))))))).........))))).....))))).. (-19.33 = -19.34 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:04 2006