Locus 2843

Sequence ID 3R_DroMel_CAF1
Location 7,634,271 – 7,634,363
Length 92
Max. P 0.989527
window4596

overview

Window 6

Location 7,634,271 – 7,634,363
Length 92
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 75.62
Mean single sequence MFE -21.16
Consensus MFE -10.10
Energy contribution -11.22
Covariance contribution 1.12
Combinations/Pair 1.37
Mean z-score -2.45
Structure conservation index 0.48
SVM decision value 2.17
SVM RNA-class probability 0.989527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7634271 92 - 27905053
CAUUACUUUGGUGCUAGCUCU---AUAGAUGAUGCUUUAAUAGGUCAUAGAGAUAUACUUUCUUGCUAUGGUCAUAAAGUUAC---------UAAGCCAAAUUU
......((((((..(((.((.---...))....((((((...(..((((((((.......)))..)))))..).))))))..)---------)).))))))... ( -17.40)
>DroSec_CAF1 10806 92 - 1
UAUUGAUUUGGCGCUAGCUUU---AUAGAUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC---------UAAGCUAAAUUU
....((((((((..(((((((---((...(((....)))...((((((((...............))))))))))))))))).---------...)))))))). ( -25.76)
>DroSim_CAF1 10892 92 - 1
UAUUAAUUUGGCGCUAGCUUU---AUAGGUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC---------UAAGCUAAAUUU
....((((((((..(((((((---((...(((....)))...((((((((...............))))))))))))))))).---------...)))))))). ( -25.26)
>DroEre_CAF1 11177 72 - 1
UAUUAAUUUGGCGCUAGCUUU---AUAUAUGAUGCUUUAAUAGGCCAUAGAUAUAG--------------------CAGCAAU---------UUAGCUAAAUUU
....(((((((((((.(((.(---((.((((..((((....)))))))).))).))--------------------))))...---------...)))))))). ( -17.20)
>DroYak_CAF1 10653 104 - 1
UACUUAUUUGGCGCUGGCUUUGUAAUAGAUGAUGUUUUAAUAGGUCAUAGAGAUAUAAUUUCUUCCUAUGCUCAUAAAGCAAUUUGCUUGUUUUAGCUAAAUUU
.....(((((((((.(((.((((.....((((.((....(((((....((((((...)))))).)))))))))))...))))...))).))....))))))).. ( -20.20)
>consensus
UAUUAAUUUGGCGCUAGCUUU___AUAGAUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC_________UAAGCUAAAUUU
....((((((((...(((...............)))......((((((((...............))))))))......................)))))))). (-10.10 = -11.22 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:03 2006