| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,631,967 – 7,632,065 |
| Length | 98 |
| Max. P | 0.531808 |
| Location | 7,631,967 – 7,632,065 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.57 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7631967 98 - 27905053 UCGGCGAUCGGCA---ACGCGAUCGCAAUCGCGAUCG---GAGUAAUCAGAAAGUCGAGCGAAUCAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAGUUG ((((((.(((...---.).(((((((....)))))))---((....)).....(((((((...(((((...)))))...)))))-)).....)).)))))).... ( -34.00) >DroPse_CAF1 8032 98 - 1 UUGGCGAUCGACA---ACGCGAUCGUAAUCGCGAUCG---CAGCAAUCAGAAAGUCGAACGAAUUAUUCACGAUGAAGAGUUUG-GCGAAGAGAAUGUCGAGCUG ..(((..((((((---..((((((((....)))))))---)............(((((((...(((((...)))))...)))))-))........))))))))). ( -32.00) >DroYak_CAF1 8700 98 - 1 UUGGCGAUCGGCA---ACGCGAUCGCAAUCGCGAUCG---GAGUAAUCAGAAAGUCGAGCGUAUCAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAGCUG ...(((.(((((.---...(((((((....)))))))---((....)).....))))).))).(((((...)))))..((((((-(((.......))))))))). ( -34.50) >DroMoj_CAF1 18136 104 - 1 UUGCCACUCGCGAUAAUCGUGAUCGCAAUGGCAAAGCCAAAACCAAACAGCAAGUCGAACGUAUCAUACACGAUGAAGAGUUUG-GUGAAGAGAAUGUCGAACUG ((((((...(((((.......)))))..)))))).......(((((((.....((((...(((...))).)))).....)))))-)).................. ( -23.90) >DroAna_CAF1 8468 92 - 1 UCGGCGAUCGGCA---ACGCGAUCGU------GAUCG---CAAUAAUCACAAAGUCGAGCGAAUUAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAACUG ((((((((((...---...)))))((------(((..---.....)))))...)))))........(((.....))).((((((-(((.......))))))))). ( -27.00) >DroPer_CAF1 8020 99 - 1 UUGGCGAUCGACA---ACGCGAUCGUAAUCGCGAUCG---CAGCAAUCAGAAAGUCGAACGAAUUAUUCACGAUGAAGAGUUUGGGCGAAGAGAAUGUCGAGCUG ..(((..((((((---..((((((((....)))))))---).............(((..((((((.(((.....))).))))))..)))......))))))))). ( -34.00) >consensus UUGGCGAUCGGCA___ACGCGAUCGCAAUCGCGAUCG___CAGCAAUCAGAAAGUCGAACGAAUCAUUCACGAUGAAGAGUUUG_GCGAAGAGAACGUCGAGCUG ((((((.((..........(((((((....)))))))................(((((((...((((.....))))...))))).)).....)).)))))).... (-18.82 = -18.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006