Locus 2841

Sequence ID 3R_DroMel_CAF1
Location 7,630,672 – 7,630,771
Length 99
Max. P 0.808766
window4594

overview

Window 4

Location 7,630,672 – 7,630,771
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -16.87
Consensus MFE -11.88
Energy contribution -11.72
Covariance contribution -0.17
Combinations/Pair 1.21
Mean z-score -1.29
Structure conservation index 0.70
SVM decision value 0.64
SVM RNA-class probability 0.808766
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7630672 99 - 27905053
AAAA-AAAAA---AAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAAGUCGUAGGUGAGAUUUGAAUAC-----
....-.....---........((.....((((((.((((((....))))))(((.((........)).)))......)).)))).....))............----- ( -15.30)
>DroSec_CAF1 7314 102 - 1
AAAA-AAAAAGAAGAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAAGUCGUAGGUGAGAUUUGAAUAC-----
....-................((.....((((((.((((((....))))))(((.((........)).)))......)).)))).....))............----- ( -15.30)
>DroSim_CAF1 7365 103 - 1
AAAAAAAAAAGAAGAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUUGGGAAGUCGUAGGUGAGAUUUGAAUAC-----
...................(((((...........))))).....(((((.(((.((........)).))).)))))..(((((........)))))......----- ( -15.80)
>DroEre_CAF1 8190 91 - 1
GAA------------AGGAGGCAACCAAUGUUCCAUUGCUAAAGGUAGUAGGGUGACGAAAAAGAGUGACCGUAUAGGGAACUCGUAGGUGAGAUAUGAAUAU-----
...------------........(((..((((((.((((((....)))))))).)))).....((((..((.....))..))))...))).............----- ( -19.70)
>DroYak_CAF1 7482 97 - 1
AAAA-----------AGAAGGCAGCAAAUAUUCCAUUGCUAAAGGCAGUAGGGUGGCGUAAAAGAGUGACCGUAUCGGUAACUCGUAGGUGAGUUAUGAAUAUUCCAA
....-----------....((.....(((((((.(((((.....)))))..(((.((........)).)))......((((((((....))))))))))))))))).. ( -22.20)
>DroAna_CAF1 7099 84 - 1
AAAA-CAAAACAA----AAAGCA------UUUUCAUUGCUAACGACAGUAGGGUGGCGUAAAAAAGUGACCAUAUCGGGAACCAAUACGUAAGAU-------------
....-........----....((------((((.(((((....).))))))))))(((((.....((..((.....))..))...))))).....------------- ( -12.90)
>consensus
AAAA_AAAAA_____AGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAACUCGUAGGUGAGAUUUGAAUAC_____
..............................(((((((((.....)))))..(((.((........)).))).....))))............................ (-11.88 = -11.72 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006