Locus 2840

Sequence ID 3R_DroMel_CAF1
Location 7,629,240 – 7,629,348
Length 108
Max. P 0.614377
window4593

overview

Window 3

Location 7,629,240 – 7,629,348
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 72.32
Mean single sequence MFE -20.59
Consensus MFE -3.20
Energy contribution -4.24
Covariance contribution 1.04
Combinations/Pair 1.21
Mean z-score -1.58
Structure conservation index 0.16
SVM decision value 0.16
SVM RNA-class probability 0.614377
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7629240 108 - 27905053
UGAAGUAGUUCCAUCAUAUCGAAAAUAAUCCAUGACACGGUUCCCAUUCCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA---AUUGGCGAUGGGAAA
........(((((((...(((.......(((((..(((((........))....)))..))))).......)))..((....(((....))).---....))))))))).. ( -22.54)
>DroSec_CAF1 5933 94 - 1
--------UUCCUUCAUAUCGAAAAUAAUCCAUGACACGGUU------CCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA---AUUGGCGAUGUGAAA
--------....(((((((((..(((..(((((..(((....------......)))..)))))......((....))....(((....))).---)))..))))))))). ( -24.50)
>DroSim_CAF1 5986 82 - 1
UGAAGUAGUUCCUUCAUAUCGAAAAUA--------------------------AGUGAAGUGGAAAAUAAGCGAAAGUAACCGAGUGAACUUA---AUUGGCGAUGUGAAA
............(((((((((..((((--------------------------(((....(((.......((....))..))).....)))).---)))..))))))))). ( -18.20)
>DroEre_CAF1 6772 106 - 1
UGAAGUAGUUCGUUUAUAUCGAAAAUAAUUCCUGACACGGUUCCCAUUUCGAAAGUGAAGUGGAAAAUAUUCGAAAGUAACCAAGUGAAUUCG---AUUGGCAGUG-G-AA
.(((....((((.......)))).....)))....(((((((.((((((((....))))))))........(....).))))..((.(((...---))).)).)))-.-.. ( -19.40)
>DroYak_CAF1 5984 99 - 1
UGAAGUAGUUCCUUCAUAUCGAAAAUAACUCCUCACUCGAUUCCCAUUUCAACAGUGAAGUGCAA----------ACUAACCAAGUGAACUUGAUGAUUGGCAGUG-G-AA
(((((......))))).............(((.(..((((((..(((((((....)))))))...----------......((((....))))..))))))..).)-)-). ( -18.30)
>consensus
UGAAGUAGUUCCUUCAUAUCGAAAAUAAUCCAUGACACGGUUCCCAUUCCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA___AUUGGCGAUG_GAAA
............(((.(((((.................................................((....))..((((.............))))))))).))). ( -3.20 =  -4.24 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:00 2006