Locus 284

Sequence ID 3R_DroMel_CAF1
Location 1,104,717 – 1,104,814
Length 97
Max. P 0.991939
window485

overview

Window 5

Location 1,104,717 – 1,104,814
Length 97
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 73.66
Mean single sequence MFE -28.12
Consensus MFE -12.27
Energy contribution -14.16
Covariance contribution 1.89
Combinations/Pair 1.21
Mean z-score -2.70
Structure conservation index 0.44
SVM decision value 2.30
SVM RNA-class probability 0.991939
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1104717 97 + 27905053
CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAAAUAG--UCGCAGAUAG------CUAGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCACAACA
.(((..((((.(((....(..(((((((((...........)--))))))))..------)))))))))))((.....(((((....))))-).....))...... ( -29.20)
>DroSec_CAF1 38290 97 + 1
CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUAG------CUGGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACA
.(((..((((((......(..(((((((((...........)--))))))))..------).)))))))))((.....(((((....))))-).....))...... ( -31.30)
>DroSim_CAF1 38294 97 + 1
CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUAG------CUGGCUAAGCCGCCUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACA
.(((..((((((......(..(((((((((...........)--))))))))..------).)))))))))(((....(((((....))))-)....)))...... ( -34.40)
>DroEre_CAF1 39746 91 + 1
CGGUAAUUAGUCUGAUAUGAAAUCUGCGAUAG-U-CAGAUAG--UCGCAGACAG----------CUAAGCCGCAUGAAAGGUCGCGAGAUC-UGAAUGGCAGCUCA
.(((..((((.(((........((((((((..-.-......)--))))))))))----------)))))))((.....(((((....))))-).....))...... ( -28.10)
>DroYak_CAF1 52780 79 + 1
UGGCAAUUAGUCUGAUUUAAAAUCUGCUUUAAAA-UCGUUCG--UCGGAGAUAC----------CUAAUCCGUAUGAAAGGUCGAGAGAUC-U-------------
.(((.....))).(((((.(((.....))).)))-)).((((--(((((.....----------....)))).)))))(((((....))))-)------------- ( -16.70)
>DroAna_CAF1 36606 102 + 1
CUGCAAUUAGUCUGAUAC-AGAUAUGCGAUAAAGUGCGACGACUUUGUUGAUAUUCCACAUCAGUUAAGCUGCAUGCAAGGUCGAGCGAUAGUGCAUGGGAGA---
..(((.((((.(((((..-.(((((.(((((((((......))))))))))))))....)))))))))..)))(((((..(((....)))..)))))......--- ( -29.00)
>consensus
CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG__UCGCAGAUAG______CU_GCUAAGCCGCAUGAAAGGUCGAGAGAUC_UGAAUGGCAAAACA
((((..(((((..........((((((((...............))))))))...........)))))))))(((....((((....))))....)))........ (-12.27 = -14.16 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:26 2006