| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,622,717 – 7,622,816 |
| Length | 99 |
| Max. P | 0.563026 |
| Location | 7,622,717 – 7,622,816 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 90.24 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.79 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7622717 99 + 27905053 AUUGAAUGUGUCGAUAUUUGAUUGGCGCUUUGAAUGUAUCGAUAGUUUCGGACUGCGCUACAAAUUAAUCGGCGCGAACUUAAAAGAUCAAUUGGAAAA (((((.((((((((((((((..((((((((((((............))))))..)))))))))))..)))))))))..((....)).)))))....... ( -24.10) >DroSec_CAF1 8518 98 + 1 AUAGAAUGUGUCGAUAUUUGAUUGGCGCUUUAAAUGUAUCGAUAGUUUCGAACUGCGCUACA-AUUAAUCGGCGCGAGCUUAAAAUAUCAAUUGACAAA ........(((((((((((..((.(((((((((.((((.((.((((.....)))))).))))-.))))..))))).))....)))))))....)))).. ( -24.10) >DroSim_CAF1 8514 99 + 1 AUAGAAUGUGUCGAUAUUUGAUUGGCGCUUUGAAUGUAUCGAUAGUUUCGUACUGCGCUACAAAUUAAUCGGCGCGAGCUUAAAAGAUCAAUUGACAAA ..((..((((((((((((((..((((((.......(((.(((.....)))))).)))))))))))..)))))))))..))................... ( -24.90) >DroYak_CAF1 8571 99 + 1 AUGGAAUGUGUCGAUAUCUUAUUGGCGCUCUCAAUCUAUCGAUAGUUUUCGACUGUGCUACAAAUUAAUCGGCGCGCGCUUAAUAGAUCAAUUGAAAAA ..........(((((((((....(((((..........((((......))))..(((((...........))))))))))....))))..))))).... ( -22.40) >consensus AUAGAAUGUGUCGAUAUUUGAUUGGCGCUUUGAAUGUAUCGAUAGUUUCGGACUGCGCUACAAAUUAAUCGGCGCGAGCUUAAAAGAUCAAUUGAAAAA ......(((((((((.......((((((((((((............))))))..)))))).......)))))))))....................... (-18.23 = -18.79 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006