Locus 2838

Sequence ID 3R_DroMel_CAF1
Location 7,611,189 – 7,611,289
Length 100
Max. P 0.784227
window4591

overview

Window 1

Location 7,611,189 – 7,611,289
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 80.74
Mean single sequence MFE -23.91
Consensus MFE -16.73
Energy contribution -15.98
Covariance contribution -0.75
Combinations/Pair 1.31
Mean z-score -1.74
Structure conservation index 0.70
SVM decision value 0.57
SVM RNA-class probability 0.784227
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7611189 100 - 27905053
AAUGCGAAUUGUAAGCAGUACGAGCAGGCUAAGAGCAGCUCAUGUGAUUGCAUUGGUAUGAGCAAUGCUAACAACAAUCUAAUCGGUAAGCUAUAUAACA
........((((((((..(((((((..((.....)).))))....(((((..(((((((.....)))))))...)))))......))).))).))))).. ( -22.60)
>DroVir_CAF1 3844 92 - 1
AAUGACAAUCGCAAACACUAUGAGCAGGCCAAGAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAAUAAUUUGAUUGGUAAGUC--------
((((.((((((((........((((..((.....)).)))).))))))))))))(((((.....)))))..((((......)))).......-------- ( -25.80)
>DroGri_CAF1 4435 96 - 1
-AUCCCAAUCGCAAACAAUAUGAACAGGCCAAAAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCCAUGCCAACAAUAAUCUAAUUGGUAACUGG--CAAU-
-.........((...(.....)..((((((((..((((...))))(((((..((((((((...))))))))...)))))...)))))..))))--)...- ( -24.10)
>DroSec_CAF1 7999 98 - 1
AAUGCGAAUCGCAAGCAGUAUGAGCAGGCUAAGAGUAGCUCCUGUGAUUGCAUUGGCAUGAGCAAUGCUAACAACAACCUCAUCGGUAAGACA--UAACA
..((((...)))).(((((....((((((((....))))..)))).))))).(((((((.....))))))).....(((.....)))......--..... ( -23.60)
>DroSim_CAF1 6898 100 - 1
AAUGCGAAUCGCAAGCAGUAUGAGCAGGCUAAGAGUAGCUCCUGUGAUUGCAUUGGAAUGAGCAAUGCUAACAACAACCUGAUCGGUAAGAUAUAUAGCA
..(((..((..((((((((....((((((((....))))..)))).))))).)))..))..))).(((((......(((.....)))........))))) ( -22.34)
>DroMoj_CAF1 3910 92 - 1
AAUACCAAUCGCAAACAAUAUGAGCAGGCCAAAAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAAUAACUUAAUUGGUGAGUC--------
..(((((((.((((.......((((..((.....)).))))......)))).(((((((.....)))))))..........)))))))....-------- ( -25.02)
>consensus
AAUGCCAAUCGCAAACAGUAUGAGCAGGCCAAGAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAACAACCUAAUCGGUAAGUCA__UAAC_
..(((.(((((((........((((..((.....)).)))).))))))))))(((((((.....))))))).....(((.....)))............. (-16.73 = -15.98 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006