Locus 2837

Sequence ID 3R_DroMel_CAF1
Location 7,608,013 – 7,608,121
Length 108
Max. P 0.706467
window4590

overview

Window 0

Location 7,608,013 – 7,608,121
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 85.74
Mean single sequence MFE -22.85
Consensus MFE -19.22
Energy contribution -19.22
Covariance contribution 0.00
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.706467
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7608013 108 - 27905053
UUCGUAAUCAUUUGGACUUAAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCUACCCGUGGCACUCAACAUUCAUAUUCCUCGUUAAGCUCUACGCCUACUAAGCAAA
............(((((((((.....(((((((((.((((...(((.....)))...)))).)))))....)).)).......))))).)))).((.......))... ( -14.40)
>DroSec_CAF1 3442 108 - 1
UUCGUAAUAAUUUUGAAUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGUACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA
...((...((((((.....))))))((((.(((((..........((......))..((((..((((((.............))))))..)))))))))))))))... ( -22.22)
>DroSim_CAF1 3448 108 - 1
UUCGUAAUAAUUUUGACUUGAAAUAUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGUACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA
...........((((.((((...((((.(((((......)))))))))........(((((..((((((.............))))))..))))).....)))))))) ( -23.52)
>DroEre_CAF1 473 108 - 1
UUCGUAAUAAAAUUGAUUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACGCCAACGCGUGGCACUCAGCAUUCAUAUUCAUCGUUGAGCUCCACGCCCACUAAGCAAG
..((((.(((((((.......)))))))(((((......)))))..)))).....((((((..((((((.............))))))..))))))............ ( -27.62)
>DroYak_CAF1 473 108 - 1
UUCGUAAUAAUAUUGACUUGAACUUUUAGAUGGGUUCCACCAUCAGUACGCCAACGCGUGGCACUCAGCAUUCAUAUUCAUCGUUGAGCUCCACGCCCACAAAGCAAG
............(((..(((........(((((......)))))...........((((((..((((((.............))))))..))))))...)))..))). ( -28.72)
>DroAna_CAF1 483 106 - 1
UUACUAAAAACUACCUCUUUAA--UUCAGAUGGGCUCCACCAUAAGUACACCAACGCGUGGCACUCAGCAUUCGUACUCUUCGCUGAGCUCCACACCCACUAAGAACU
......................--...((.((((...........((......))..((((..((((((.............))))))..)))).))))))....... ( -20.62)
>consensus
UUCGUAAUAAUUUUGACUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGCACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA
.........................((((.(((((..........((......))..((((..((((((.............))))))..)))))))))))))..... (-19.22 = -19.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:57 2006