Locus 2832

Sequence ID 3R_DroMel_CAF1
Location 7,586,612 – 7,586,723
Length 111
Max. P 0.727460
window4579

overview

Window 9

Location 7,586,612 – 7,586,723
Length 111
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 87.90
Mean single sequence MFE -27.26
Consensus MFE -19.08
Energy contribution -19.92
Covariance contribution 0.84
Combinations/Pair 1.08
Mean z-score -2.13
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.727460
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7586612 111 + 27905053
GUUUAAGAGAGCGGCACAGGAAGAGACCGGUGCGGGA--GAGCGUUACAUGAUGCAAUUAAGUUCUUGUAAAAAGAGAGUACACAGGAAGAAAUAUGGUUGUGGCAUAUGAUU
.((((.((((((.((((.((......)).))))....--..(((((....)))))......)))))).))))......((.(((((..(......)..)))))))........ ( -24.20)
>DroSec_CAF1 8032 111 + 1
GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGAAAGAAAUAUGAUUGUGGCAUUUGAUU
.........(((.((((.((......)).))))((..--..))))).((.(((((......((((((.......)))))).(((((..(......)..))))))))))))... ( -27.20)
>DroSim_CAF1 8094 111 + 1
GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGAAAGAAAUAUGAUUGUGGCAUUUGAUU
.........(((.((((.((......)).))))((..--..))))).((.(((((......((((((.......)))))).(((((..(......)..))))))))))))... ( -27.20)
>DroEre_CAF1 8809 111 + 1
GAUUAAGAGUACAGCCCUGGAAAAGACCGGUGCGCGAAUGAGCGUUGCAUGAUGCAAUUAAGCUCUUGUAAAUAAAGAGUAUACAGGCAGAAAUAUGAAGGUAGUGUUUGA--
......((((((.(((((((......)))).((((......))))..((((.(((...((.((((((.......)))))).))...)))....))))..))).))))))..-- ( -24.20)
>DroYak_CAF1 8198 109 + 1
GAUUAAGAGAGCGGCACUGGAAAAGACCGGUGCGCAA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGGUAGAAAAAUGGUUGUAGUAUUUGG--
..(((.((((((.(((((((......)))))))....--..(((((....)))))......)))))).))).....((((((((((.((......)).)))).))))))..-- ( -33.50)
>consensus
GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA__GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGGAAGAAAUAUGAUUGUGGCAUUUGAUU
..(((.((((((.((((.((......)).))))........(((((....)))))......)))))).)))..........(((((..(......)..))))).......... (-19.08 = -19.92 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006