Locus 283

Sequence ID	3R_DroMel_CAF1
Location	1,104,573 – 1,104,666
Length	93
Max. P	0.528409

overview

Window 4

Location	1,104,573 – 1,104,666
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	88.06
Mean single sequence MFE	-28.46
Consensus MFE	-23.37
Energy contribution	-23.86
Covariance contribution	0.49
Combinations/Pair	1.05
Mean z-score	-1.39
Structure conservation index	0.82
SVM decision value	-0.01
SVM RNA-class probability	0.528409
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1104573 93 + 27905053
CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAAUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGGGCAAUCCAAAU
.(..(((.....((((((.(((((((............)))))))...((((((((........))))))))....)))))).)))..).... ( -32.00)
>DroSec_CAF1 38146 93 + 1
CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAAUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU
.(..(((....((((..(.(((((((............)))))))...((((((((........))))))))...)..)))).)))..).... ( -28.70)
>DroSim_CAF1 38150 93 + 1
CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAGUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU
.(..(((....((((..(.(((((((............)))))))...((((((((........))))))))...)..)))).)))..).... ( -28.70)
>DroEre_CAF1 39616 82 + 1
CGAGUUGAAGAACCCCUGAGUGGCGCUCCGCGAGUAUUGCGCCAUGAUUUCGAU-----------UGCCGAAGUACUAGGGCUCCAUCCAAAU
.(((.........(((((.(((((((..(....)....))))))).((((((..-----------...))))))..))))))))......... ( -23.80)
>DroYak_CAF1 52636 93 + 1
CGAGUUGAAGAGCCCCUGAGUGGCGCUCUGCGAGUAUUGCGCCAUGACUUUGAUUCGCCAUCGAGUGUCGAAAUACUAGGGUUCAAUAUAAAU
.........((((((..(.(((((((..((....))..)))))))(((((((((.....)))))).)))......)..))))))......... ( -29.10)
>consensus
CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAGUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU
.............(((((.(((((((............)))))))...((((((((........))))))))....)))))............ (-23.37 = -23.86 +   0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:25 2006