Locus 2829

Sequence ID 3R_DroMel_CAF1
Location 7,578,160 – 7,578,258
Length 98
Max. P 0.515186
window4572

overview

Window 2

Location 7,578,160 – 7,578,258
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 96.98
Mean single sequence MFE -18.70
Consensus MFE -17.14
Energy contribution -17.45
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.92
SVM decision value -0.04
SVM RNA-class probability 0.515186
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7578160 98 - 27905053
AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA---A
.......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))..---. ( -19.60)
>DroSec_CAF1 10188 98 - 1
AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUAUUCUUAA---A
........((((((....(((((((((((....)))(((.....((((...(((......)))..))))....))).))))))))..))))))....---. ( -19.80)
>DroSim_CAF1 10624 98 - 1
AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA---A
.......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))..---. ( -19.60)
>DroYak_CAF1 10238 101 - 1
AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACCCUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUAAAAAAA
.......(((((((.....)))))))....((((.........(((...(((.......)))...))).....((((((.....))))))))))....... ( -15.80)
>consensus
AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA___A
.......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))...... (-17.14 = -17.45 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:40 2006