Locus 2823

Sequence ID 3R_DroMel_CAF1
Location 7,560,421 – 7,560,520
Length 99
Max. P 0.622480
window4561

overview

Window 1

Location 7,560,421 – 7,560,520
Length 99
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 83.56
Mean single sequence MFE -39.28
Consensus MFE -23.88
Energy contribution -24.16
Covariance contribution 0.28
Combinations/Pair 1.31
Mean z-score -2.74
Structure conservation index 0.61
SVM decision value 0.18
SVM RNA-class probability 0.622480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7560421 99 - 27905053
CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGACGUUCCAUGAACGCCCAUUGUUGGACAUCCAGU-----------UGCGAACGG-GUGAAGU
....((((...)))).((((.(((.((((((...(.(..((((((((((............))))))))))..).))))))).-----------...))).))-))..... ( -34.40)
>DroSec_CAF1 55525 99 - 1
CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGCUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU-----------UGCGAAGGG-GUGAAGU
....((((...)))).((((((((.((((((...(((..((((((((((............))))))))))..))))))))).-----------...))))))-))..... ( -45.80)
>DroSim_CAF1 56474 99 - 1
CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGCUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU-----------UGCGAAGGG-GUGAAGU
....((((...)))).((((((((.((((((...(((..((((((((((............))))))))))..))))))))).-----------...))))))-))..... ( -45.80)
>DroEre_CAF1 57780 99 - 1
CCAUGGCCUUUGGUCUUCCCCUUUUCUGGAUUCAGAUUGACGGUGGGCGAUGUUCCAUGAACGCCCAUUGUUGGCCAUCCAGU-----------UGCGAAGGG-GUGAAGU
....((((...))))..(((((((.((((((...(.(..((((((((((............))))))))))..)).)))))).-----------...))))))-)...... ( -38.00)
>DroYak_CAF1 59051 99 - 1
CCAUGGCCUUUGGUCUUCCUCUUUUCUGGAUUCAGAUUGACAGCGGGCGAUGUUCCAUGAACGCCCAUUGUUGGCCAUCCAGU-----------UGCGAAGGG-GUGAAGU
....((((...))))..(((((((.((((((...(.(..((((.(((((............))))).))))..)).)))))).-----------...))))))-)...... ( -31.20)
>DroAna_CAF1 66961 110 - 1
CCAUGGCCUUUGGCCAGCCUGGAUUCUG-AUUCGGAUUGGCCAUGUCGCAUGCUCGAUGAAUGGCCAUUGUCAGUCGACCACUCCAUAUCUCCAUAUGAAGGCUGACAAGU
...(((((..((((((..((((((....-))))))..)))))).((((......))))....)))))(((((((((((....))(((((....)))))..))))))))).. ( -40.50)
>consensus
CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGAUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU___________UGCGAAGGG_GUGAAGU
......((((((.............((((((...(.(((((((((((((............))))))))))))).)))))))..............))))))......... (-23.88 = -24.16 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:29 2006