Locus 2822

Sequence ID 3R_DroMel_CAF1
Location 7,554,717 – 7,554,813
Length 96
Max. P 0.500000
window4560

overview

Window 0

Location 7,554,717 – 7,554,813
Length 96
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -21.64
Consensus MFE -7.75
Energy contribution -9.31
Covariance contribution 1.56
Combinations/Pair 1.10
Mean z-score -2.22
Structure conservation index 0.36
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7554717 96 + 27905053
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA----AGGCAU-UACU----UAUAUGCGCAUGAAGAAAAGAUGGAGUACAAAGUGUACUAAU-----------AAA
....(((((((((..((((.((((.....)))).))))..)----))))))-))..----........................(((((.....)))))...-----------... ( -17.90)
>DroSec_CAF1 49797 100 + 1
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAUAAA----AGGCAU-UCCGAAGAUAUAUGAGCAUGAAGAAAAGAUGGAGUACGAAGUGUACUAAU-----------AAA
........(((((..(((((((.(((((((((.(((((...----....))-)))...))).)))))))))))))..)))))..(((((.....)))))...-----------... ( -25.00)
>DroSim_CAF1 50763 104 + 1
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAUAAAAGAAAGGCAU-UCCUAAGAUAUAUGAGCAUGAAGAAAAGAUAGAGUACGAAGUGUAAUAAU-----------AAA
.((((..((((((..(((((((.(((((((((((((((...........))-))))..))).)))))))))))))..))))))..)).))............-----------... ( -24.90)
>DroEre_CAF1 52034 112 + 1
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA----GGGCAUUUCCUAAAAUAUAUGGGCAUGAGGAAAAGUAUAAGUGGGAAGAGUAUUAAUGGAGGUACACGAAA
.((..((((((((..((((.((((.....)))).))))..)----)))))))(((((...(((((...(.....)....)))))..)))))...(((((......))))).))... ( -20.90)
>DroYak_CAF1 53134 100 + 1
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCGGGAAGAAA----AGGCAU-UCCAAAAAUAUAUGCACACGAAGAAAAGUAUUUUCGGGUAGUGUACUAAU-----------AAA
.....((((((((..((((.((((.....)))).))))..)----))))))-)...........(((((.((((((......))))))....))))).....-----------... ( -19.50)
>consensus
ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA____AGGCAU_UCCUAAAAUAUAUGAGCAUGAAGAAAAGAUGGAGUACGAAGUGUACUAAU___________AAA
........(((((..(((((((.((((((....(((................))).......)))))))))))))..))))).................................. ( -7.75 =  -9.31 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:28 2006