Locus 2820

Sequence ID 3R_DroMel_CAF1
Location 7,547,330 – 7,547,432
Length 102
Max. P 0.611928
window4558

overview

Window 8

Location 7,547,330 – 7,547,432
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 87.20
Mean single sequence MFE -27.15
Consensus MFE -22.95
Energy contribution -22.63
Covariance contribution -0.32
Combinations/Pair 1.10
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.16
SVM RNA-class probability 0.611928
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7547330 102 - 27905053
G-AUGGACUGACUCCCUCUUUCAUUUUUGUUUCCUCCUUUCGACACGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCAAUGCUCAU
.-.(((((((((................((.((........)).))..........((((((......)))))).)))...)))))).(((((....))))). ( -26.70)
>DroSec_CAF1 42544 102 - 1
G-ACGGACCGACUCCCUCUUCCGUUUCCGUUUCCCCCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU
.-..((((((((..........(((..((..((........))..)).))).....((((((......)))))).)))...)))))..(((((....))))). ( -29.80)
>DroSim_CAF1 43441 102 - 1
G-AUGGACUGACUCCCUCUUCCGUUUCCGUUUCCCCCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU
.-.(((((((((..........(((..((..((........))..)).))).....((((((......)))))).)))...)))))).(((((....))))). ( -28.50)
>DroEre_CAF1 44718 94 - 1
G-AUGGACU----C--CCUUCCAUUUCCGUUUC--CCUUUCUACUGCCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU
(-(((((..----.--...))))))........--..........((((.......((((((......))))))......))))....(((((....))))). ( -25.02)
>DroYak_CAF1 45772 95 - 1
GAAUGGACU----U--CCAUCCAUUUCCGUUUC--CCUUUCGAUUGCCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUUCACUGGGCCACUGCUCAU
(((((((..----.--...))))))).......--......((..((((.......((((((......))))))......))))))..(((((....))))). ( -25.72)
>consensus
G_AUGGACUGACUCCCUCUUCCAUUUCCGUUUCC_CCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU
..((((((....................(((.................))).....((((((......)))))).)))))).......(((((....))))). (-22.95 = -22.63 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:26 2006