Locus 282

Sequence ID 3R_DroMel_CAF1
Location 1,101,632 – 1,101,722
Length 90
Max. P 0.538708
window483

overview

Window 3

Location 1,101,632 – 1,101,722
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 80.89
Mean single sequence MFE -34.37
Consensus MFE -22.88
Energy contribution -25.10
Covariance contribution 2.22
Combinations/Pair 1.19
Mean z-score -1.36
Structure conservation index 0.67
SVM decision value 0.01
SVM RNA-class probability 0.538708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1101632 90 + 27905053
GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGCAGCUUUUCCCAGGCGUUGGACUGCCGACUCCUUCUUGUAACCUGGCGACAUAGCGAU
(((((.(((((.(((((.(((.(((((((............)))))))...))).)))).).)))))((((......)))).)))))... ( -33.40)
>DroSec_CAF1 35217 90 + 1
GCUGUUGAAGGCGCGGCUGUUCUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACUUGGCGGCAUAGCGAU
(((((((((((.(((((((((((((((((.(((....))).)))))))..))))))))).).))))).........))))))........ ( -40.00)
>DroSim_CAF1 35226 90 + 1
GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACUUGGCGGCAUAGCGAU
(((((((((((.(((((((((.(((((((.(((....))).)))))))...)))))))).).))))).........))))))........ ( -37.70)
>DroEre_CAF1 36737 90 + 1
GCUGUUGAAGGCGCGGCUGUUGUACUUGGAAGAAGCACUUCCCAGGCGUUGGACGGCCGACUGCUUUUUGUAGCCCGGCGGCAUCGCGAU
(((((((..(((.(((((((((..((((((((.....))).)))))..)..))))))))..(((.....)))))))))))))........ ( -33.80)
>DroYak_CAF1 49588 90 + 1
GCUGUUGAAGGCGCGGCUGUUGUGCUUGGAAGAAGCACUUCCCAGGCGUUGGACGGCCGACUCCUUUUUGUAACCCGGCGGCAUCGCGAU
(((((((((((.(((((((((.((((((((((.....))).)))))))...)))))))).).)))).........)))))))........ ( -35.60)
>DroAna_CAF1 33135 87 + 1
GCUAUUGUUGGCACGAUGGGA---GCGAGAAUAGGGCUUGCCCAGACGCUGUACGGCUGACUCCUUGGAGUAGUUCUUGGGCAUUUUGAU
.(((((((....)))))))((---((.........))))(((((((((((....)))..((((....)))).)))..)))))........ ( -25.70)
>consensus
GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACCCGGCGGCAUAGCGAU
(((((((((((.(((((((((.(((((((............)))))))...)))))))).).))))).........))))))........ (-22.88 = -25.10 +   2.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:24 2006