Locus 2819

Sequence ID 3R_DroMel_CAF1
Location 7,539,111 – 7,539,227
Length 116
Max. P 0.615592
window4557

overview

Window 7

Location 7,539,111 – 7,539,227
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.49
Mean single sequence MFE -25.76
Consensus MFE -20.04
Energy contribution -20.16
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.78
SVM decision value 0.17
SVM RNA-class probability 0.615592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7539111 116 - 27905053
GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUGCCUUACGAUGUGUGAACUUUCGCCCGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG
(((((((............((....(((((...(((.((((((.(((...(....)..)))...))))))...)))..)))))....))............)))))))...-..... ( -23.85)
>DroSec_CAF1 34397 106 - 1
GCUGCAGAAUUAAUGAACGAUGGAAUUUUC---------CCUUACGAUGUGUGAACU-UCGCCCGGGGAAAAGUUAAAGUGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG
(((((((..................(((((---------(((..(((.((....)).-)))...))))))))(((((.((.......)).)))))......)))))))...-..... ( -26.90)
>DroSim_CAF1 35306 115 - 1
GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUGCCUUACGAUGUGUGAACU-UCGCCCGGGGUAAAGUUAAAGUGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG
(((((((.(((((((...((........)).........((((((........((((-(..((...))..)))))...))))))....)))))))......)))))))...-..... ( -27.60)
>DroEre_CAF1 36346 115 - 1
GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCUUACGAUGUGUGAACU-UUGCCCGGGG-AAAGUUAAGGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAAAAAGGG
(((((((.(((((((..((..((.((((......)))).))...)).......((((-((.(....).-)))))).............)))))))......)))))))......... ( -24.10)
>DroYak_CAF1 34560 115 - 1
GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCCUACGAUGUGUGAACU-UUGCCUGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AUGGG
(((((((............((....(((((...(((.((((((((((.((....)).-)))..)))))))...)))..)))))....))............)))))))...-..... ( -26.35)
>consensus
GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCUUACGAUGUGUGAACU_UCGCCCGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA_AAGGG
(((((((.(((((((...((........)).......((((((.(((...(....)..)))...))))))..................)))))))......)))))))......... (-20.04 = -20.16 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:25 2006