Locus 2818

Sequence ID 3R_DroMel_CAF1
Location 7,539,003 – 7,539,093
Length 90
Max. P 0.505263
window4556

overview

Window 6

Location 7,539,003 – 7,539,093
Length 90
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -23.56
Consensus MFE -17.86
Energy contribution -18.46
Covariance contribution 0.60
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value -0.06
SVM RNA-class probability 0.505263
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7539003 90 + 27905053
CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAACUGAGUGGCCAGGCAAACAUGUUUGUUCCACUCAAGGGCAU
(((.(((.(((........(((.....)))......))))--------------------))........(((((((.((((((....))))))..))))))).)))... ( -24.24)
>DroSec_CAF1 34289 90 + 1
CCCAUUCAGAGCGAUCAGUGGAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAAGUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU
(((.(((.(((........(((.....)))......))))--------------------))........(((((((.((((((....))))))..))))))).)))... ( -24.64)
>DroSim_CAF1 35198 90 + 1
GCCAUUCAGAGCGAUCAAUGUAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAAGUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU
(((.(((.(((........(((((.......)))))))))--------------------))........(((((((.((((((....))))))..)))))))..))).. ( -22.60)
>DroEre_CAF1 36234 90 + 1
CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUGUAUUUCG--------------------AAAUAAUAACUGAGUGCCCAGGCAAACGUGUUUGUCCCACUCAAGGGCAU
(((........(((.(((.(((.....))))))....)))--------------------..........((((((....((((((....)))))).)))))).)))... ( -22.10)
>DroYak_CAF1 34432 110 + 1
GCCAUUCGUAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCGAAAUAAUAACGUAUAUCUCGAAAUAAUAACUGAGUGAAGAGGCAAACAUGUUUGUUCCACUCAAGGGCAU
(((((((((........)))))))....((((.(((.((((.(((........))).)))).)))......(((((((.(((((....))))).)).))))))))))).. ( -24.20)
>consensus
CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCG____________________AAAUAAUAACUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU
(((.......(.(((....(((.....)))....))).)...............................(((((((...((((((....))))))))))))).)))... (-17.86 = -18.46 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:24 2006