Locus 2815

Sequence ID 3R_DroMel_CAF1
Location 7,531,817 – 7,531,907
Length 90
Max. P 0.541257
window4551

overview

Window 1

Location 7,531,817 – 7,531,907
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 76.09
Mean single sequence MFE -28.28
Consensus MFE -14.67
Energy contribution -15.48
Covariance contribution 0.81
Combinations/Pair 1.22
Mean z-score -1.68
Structure conservation index 0.52
SVM decision value 0.02
SVM RNA-class probability 0.541257
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7531817 90 - 27905053
GGUAU------GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCCCGA
.((((------.((((((((......((((((.((......)).))...))))....)))))))))))).((((((....)))))).......... ( -31.00)
>DroSec_CAF1 27391 90 - 1
GGUAU------GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCCCGA
.((((------.((((((((......((((((.((......)).))...))))....)))))))))))).((((((....)))))).......... ( -31.00)
>DroSim_CAF1 28250 90 - 1
GGUAU------GCCUUGGAGGGCAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCUCGA
.((((------.(((((((((((..(((..(.(......).)..)))....)))...)))))))))))).((((((....)))))).......... ( -33.10)
>DroEre_CAF1 27439 96 - 1
GGUAUGCCUAUGCCUUGGAGGACAUUGCUGGUGAAAAACCCUUGGCAGUCAGCCUAACUCCGGCGAUCCGGCCAAAUACUUUUGGCAAGCUUUCGA
(((((....)))))(((((((...((((((((.....))).(((((.(((.(((.......))))))...)))))........))))).))))))) ( -29.10)
>DroYak_CAF1 27204 90 - 1
GGUAU------GCCUUGGAGGACAUUGCUGGCGAAGAACCCUUGGCAUUCAGCCUAACUCCGACGAUCCGGCCAAAUACUUUUGGCAAGCUGGCGA
....(------(((((((((......((((((.(((....))).))...))))....)))))).......((((((....)))))).....)))). ( -29.00)
>DroAna_CAF1 35159 77 - 1
GUUAC------AGCUC-UAGGAUC---UUGGCCAAGUGCCUUUGAACUU------UGCU---AAGAGCCAAAACAAUUUUUUUGUCAUUCAUUUUG
.....------.....-..((.((---(((((.((((........))))------.)))---)))).))...((((.....))))........... ( -16.50)
>consensus
GGUAU______GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCUCGA
(((........)))((((((......((((((.((......)).))...))))....)))))).......((((((....)))))).......... (-14.67 = -15.48 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:19 2006