| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,521,821 – 7,521,914 |
| Length | 93 |
| Max. P | 0.852594 |
| Location | 7,521,821 – 7,521,914 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 75.86 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -17.26 |
| Energy contribution | -15.41 |
| Covariance contribution | -1.86 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7521821 93 + 27905053 AAUUUGGGGAUUUGCACUGCCAGCCGCAAUUGUAAGCGACAUAAAAGCGCUUAGACUCCGACUCCGGAGCGUUAAACGAAGCAUUAG-----------CCCCAG ....(((((...(((..(((.....))).(((((((((.(......)))))).(.(((((....)))))).....)))).)))....-----------))))). ( -28.80) >DroPse_CAF1 27548 97 + 1 AAUUUGGGGAUUUGUUCUUCUGGCAG-GGCUGAAAGCGACAUGAAAGCGCUUAAAGUUCA------AGGCGCUAAACGAGUCAUUAGGUCCGGUCCGUCCCCAG ....(((((((.((((.....))))(-(((((.....(((.((..(((((((........------)))))))...)).)))........))))))))))))). ( -30.82) >DroEre_CAF1 17535 93 + 1 AAUUUGGGGAUUUGCACUGCCAGCCGCAAUUGUAAGCGACAUGAAAGCGCUUAGACUCCGACUCCGGAGCGUUAAACGAGGCAUUAG-----------CCCCAG ....(((((...(((..(((.....))).(((((((((.(......)))))).(.(((((....)))))).....)))).)))....-----------))))). ( -28.60) >DroYak_CAF1 17463 93 + 1 AAUUUGGGGAUUUGCACUGCCAGCCGCAAUUGUAAGCGACAUGAAAGCGCUUACACUCCGACUCCGGAGCGUUAAACGAGGCAUUAG-----------CCCCAG ....(((((...(((..((.....(((...((((((((.(......))))))))).((((....))))))).....))..)))....-----------))))). ( -32.20) >DroAna_CAF1 22601 86 + 1 AAUUUGGGGAUUUGUACGCGAAGCCACAACUGGAAGCGACAUAAAAGCGCUUA-------ACUCCAAAGCGUUAAACGAGGCAUUAG-----------CCCCAG ....(((((...(((.(((....(((....)))..))).......(((((((.-------......))))))).......)))....-----------))))). ( -25.10) >DroPer_CAF1 16754 97 + 1 AAUUUGGGGAUUUGUUCUUCUGGCAG-GGCUGAAAGCGACAUGAAAGCGCUUAAAGUUCA------AGGCGCUAAACGAGGCAUUAGGAACGGUCCGUCCCCAG ....(((((((((((((((...((.(-((((..(((((.(......))))))..))))).------..))(((......)))...))))))))...))))))). ( -32.90) >consensus AAUUUGGGGAUUUGCACUGCCAGCCGCAACUGUAAGCGACAUGAAAGCGCUUAAACUCCGACUCCGAAGCGUUAAACGAGGCAUUAG___________CCCCAG ....(((((..((((...((.((......))))..))))......(((((((..............))))))).........................))))). (-17.26 = -15.41 + -1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:16 2006