Locus 2810

Sequence ID 3R_DroMel_CAF1
Location 7,518,652 – 7,518,747
Length 95
Max. P 0.831475
window4545

overview

Window 5

Location 7,518,652 – 7,518,747
Length 95
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 88.24
Mean single sequence MFE -34.31
Consensus MFE -29.83
Energy contribution -30.82
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.87
SVM decision value 0.72
SVM RNA-class probability 0.831475
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7518652 95 + 27905053
-----------------GUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC
-----------------((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))... ( -33.70)
>DroSec_CAF1 14299 112 + 1
CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC
((.....)).......(((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))).. ( -36.80)
>DroSim_CAF1 14791 112 + 1
CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC
((.....)).......(((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))).. ( -36.80)
>DroEre_CAF1 14402 112 + 1
CCGUUUAGGAUACCCCCGUGAUACGUAUGCAAUGUGACUUCAUUGGUACCACCGAAUGGACCUGGGAAUGUGGUGCCUUUCCAGCUGGGGAAAUUCGCACGCAAAUCACGAC
((.....)).......((((((..(..(((((((......))))((((((((.................))))))))(((((......)))))...)))..)..)))))).. ( -29.93)
>consensus
CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC
................(((((((((..(((............((((.....)))).((((...(((((.....))))).)))).............)))..))))))))).. (-29.83 = -30.82 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:13 2006