Locus 2808

Sequence ID 3R_DroMel_CAF1
Location 7,513,273 – 7,513,363
Length 90
Max. P 0.922451
window4541

overview

Window 1

Location 7,513,273 – 7,513,363
Length 90
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 66.83
Mean single sequence MFE -22.35
Consensus MFE -6.23
Energy contribution -7.48
Covariance contribution 1.25
Combinations/Pair 1.08
Mean z-score -2.39
Structure conservation index 0.28
SVM decision value 1.15
SVM RNA-class probability 0.922451
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7513273 90 - 27905053
---GGUUUUCACAAUCUAAUUGGAG--AACUUUUUUUGGUGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUACAAUAUCAAU
---(((((((.((((...)))))))--))))....(((((((.(((((((.(((((((--------(..........)))))))).)))))).).))))))). ( -26.40)
>DroSec_CAF1 8961 91 - 1
CGAAGAAGGCGC--CAUAAUUGGAG--GCCUUUUUUCCGCGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUUCACUACUAAU
.(((((((((.(--((....)))..--)))))))))....((..((((((.(((((((--------(..........)))))))).))))))..))....... ( -31.30)
>DroSim_CAF1 9311 91 - 1
CGAAGAAGUCGC--CAUAAUUGGAG--GCCUUUUUUCCGCGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUUCACUACUAAU
.(((((((((.(--((....))).)--))..))))))...((..((((((.(((((((--------(..........)))))))).))))))..))....... ( -26.40)
>DroEre_CAF1 9025 91 - 1
CCUUUAAGGCGC--CAUAAUUGGGA--GACAUUUUUACGCAUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAAUACACUAUUAUU
.......(((..--.((((...(((--((.((((((((((........))).)))).)--------)).)))))...)))).....))).............. ( -16.00)
>DroYak_CAF1 9033 71 - 1
-----AAGGCCC--CAUAAUUGGG-----------------UAGCUUGGCGAUAAGUA--------GUAUCUUCAUUGUAUUUAUAGCCAGCACACUAUUAUU
-----.....((--((....))))-----------------..(((.(((.(((((((--------.((.......))))))))).))))))........... ( -16.80)
>DroPer_CAF1 5272 92 - 1
------AAUUAC----UGUUUGUCGGUGUUUGUGUUCGGUUUGGACU-GCGAUAACUAAUCGUAAAAUAUCUUCAAUUUACUUAUAACAUUGGCACAAUAAAA
------......----((((((((((((((.((((((.....))))(-(((((.....))))))...............))....)))))))))).))))... ( -17.20)
>consensus
____GAAGGCGC__CAUAAUUGGAG__GACUUUUUUCCGCGUAGACUGGCGAUAAGUA________GUAUCUUCAAUUUAUUUAUAGCCAGUACACUAUUAAU
............................................((((((.(((((((....................))))))).))))))........... ( -6.23 =  -7.48 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006