Locus 2804

Sequence ID 3R_DroMel_CAF1
Location 7,504,814 – 7,504,922
Length 108
Max. P 0.753695
window4534

overview

Window 4

Location 7,504,814 – 7,504,922
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.40
Mean single sequence MFE -37.73
Consensus MFE -20.19
Energy contribution -20.75
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.54
SVM decision value 0.48
SVM RNA-class probability 0.753695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7504814 108 + 27905053
AGGGCGAGGCCAUGGGUGGGUCGUGGAGCAGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGCUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA
..(((....(((....)))(((((.(((((..(((((.((((((.(((......))).)))....))).)))))))))).)))))))).((((((.(....))))))) ( -41.50)
>DroPse_CAF1 524 90 + 1
AGGGCGAGGCCAU---UGAGCUGUUGCGAUGGCCGCUGUUAGAAGUGGUGUAGUUAU---------------UGUGUUCGGCGUCGCCGUUGCUAUCGAAAGUGGUAA
..(((((.(((..---.((((....((((((((((((......)))))).....)))---------------)))))))))).))))).((((((.(....))))))) ( -34.40)
>DroSec_CAF1 536 108 + 1
AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA
..(((....(((....)))(((((.((((...(((((.((((((.(((......))).)))....))).))))).)))).)))))))).((((((.(....))))))) ( -39.00)
>DroSim_CAF1 536 108 + 1
AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA
..(((....(((....)))(((((.((((...(((((.((((((.(((......))).)))....))).))))).)))).)))))))).((((((.(....))))))) ( -39.00)
>DroAna_CAF1 585 105 + 1
AGGGCGAGGCCAUGGAAAGGUUGUGA---UGCCCGCCGCCGGACGUGGUGCUGUGGUAGUGUUGGUUCUGGUAGUGCUCGGUGUCGCCGUUACUAUCGAAAGUGGUAA
..(((((.(((.......(((.....---.)))(((..(((((..(((..(((...)))..)))..)))))..)))...))).))))).((((((.(....))))))) ( -38.10)
>DroPer_CAF1 524 90 + 1
AGGGCGAGGCCAU---UGAGCUGUUGCGAUGGCCGCUGUUAGAAGUGGUGUAGUUAU---------------UGUGUUCGGCGUCGCCGUUGCUAUCGAAAGUGGUAA
..(((((.(((..---.((((....((((((((((((......)))))).....)))---------------)))))))))).))))).((((((.(....))))))) ( -34.40)
>consensus
AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAGGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA
..((((..(((...........(((((....))))).....(((........)))........................)))..)))).((((((.(....))))))) (-20.19 = -20.75 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:03 2006