Locus 2803

Sequence ID 3R_DroMel_CAF1
Location 7,503,682 – 7,503,783
Length 101
Max. P 0.624624
window4533

overview

Window 3

Location 7,503,682 – 7,503,783
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.26
Mean single sequence MFE -30.12
Consensus MFE -19.46
Energy contribution -20.68
Covariance contribution 1.22
Combinations/Pair 1.05
Mean z-score -2.32
Structure conservation index 0.65
SVM decision value 0.19
SVM RNA-class probability 0.624624
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7503682 101 + 27905053
AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUUU-UUAAUUUUA
(((((((((((((((((....))(((((....)))))....))))))))))(((((((((((((....)))))..)-)))..))))..)))))-......... ( -35.30)
>DroVir_CAF1 3655 90 + 1
UAUAGUUUAUCUGUGUCCCUUGCAUCGCAAGUACGACACAUGACGGGCAGCUUCAUUUUA----------UUUCGAUUUAAUUAACA--UUUA-AUACAUUUA
....(((..((((((((.(((((...)))))...)))))).))..)))............----------.................--....-......... ( -17.00)
>DroSec_CAF1 3007 101 + 1
AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUACGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUGU-UUAAUUUUA
.((((.(((((((((((....))((((......))))....))))))))))))).(((((((((....)))))..)-))).............-......... ( -30.90)
>DroSim_CAF1 3008 101 + 1
AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUUU-UUAAUUUUA
(((((((((((((((((....))(((((....)))))....))))))))))(((((((((((((....)))))..)-)))..))))..)))))-......... ( -35.30)
>DroEre_CAF1 2998 102 + 1
AGAAGGUUAUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGA-CCAAUUGAAAGCUUUUUUUAAUUUUA
((((((((.(((.((((.((((.(((((....)))))...)))).)))).).(((..(((((....)))))..)))-......)).))))))))......... ( -27.80)
>DroYak_CAF1 3003 101 + 1
AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAAAAAAUUUCU-UUGG-CCAAUCGCAAGCUUUUCUUAAUUUUA
.((((.(((((((((((....))(((((....)))))....))))))))))))).((((.(((.......)-)).)-)))..(....)............... ( -34.40)
>consensus
AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG_CCAAUUGAAAGCUUUU_UUAAUUUUA
.((((.(((((((((((....))(((((....)))))....)))))))))))))................................................. (-19.46 = -20.68 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:02 2006