Locus 2802

Sequence ID 3R_DroMel_CAF1
Location 7,488,206 – 7,488,297
Length 91
Max. P 0.791257
window4532

overview

Window 2

Location 7,488,206 – 7,488,297
Length 91
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 69.99
Mean single sequence MFE -28.70
Consensus MFE -9.08
Energy contribution -10.44
Covariance contribution 1.36
Combinations/Pair 1.24
Mean z-score -1.89
Structure conservation index 0.32
SVM decision value 0.59
SVM RNA-class probability 0.791257
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7488206 91 + 27905053
AUUCAUUGCU-AUCCACUAAGUUGACAAAUGUCGUCUAACAAUGGAG-------UGGAAUCGCGGGGAG----GUGGAGCAUGUUUUCUAUAGCAA---CGCCGGG
..((.((((.-.((((((..((((((....)))(.....))))..))-------))))...)))).))(----(((..((.(((.....)))))..---))))... ( -23.20)
>DroSec_CAF1 8139 91 + 1
AUUCAUUGCU-AUCCACUAAGUUGACAAAUGUCGACUGACAAUGGAG-------UGGAAUCGCGGGGAG----GUGGAGCAUGUUUUCUAUAGCGA---CGCGGGG
..........-.((((((.(((((((....)))))))........))-------)))).(((((..(..----((((((......))))))..)..---))))).. ( -29.70)
>DroEre_CAF1 8371 90 + 1
AUUCGCUGCU-CCCCUCCAAGUUGACAAAUGUCGACUAACAAUGGAG-------GGGAAUUGUGGGGAG----GUGGAGCAUGUUUUCUAUAGCG----AGCUCGG
.(((.(..((-(((((((((((((((....))))))).....)))))-------))))...)..).)))----...((((.((((......))))----.)))).. ( -39.40)
>DroYak_CAF1 13947 79 + 1
AUUCGCUGCU-ACCCACUAAGUUGACAAAUGUCGACUAACAAUAAAC----------AAU----------------GAGCAUGUUUUCUAUAGCGAGCGAGCUUGG
.(((((((((-(.......(((((((....)))))))......((((----------(..----------------.....)))))....)))).))))))..... ( -20.60)
>DroAna_CAF1 8845 104 + 1
ACCUAAUGCCGAGCCACUAAGUUGACAAAUGUCGAAUGACAAUGGCACGGCUCGGGUAUUUGCAGGGCGGUGGGUGGAACAGCUUUUUUAUGAAAA--GAGCUCGC
((((...((((.((((.....(((((....))))).......)))).))))..))))(((..(......)..))).....((((((((.....)))--)))))... ( -30.60)
>consensus
AUUCACUGCU_ACCCACUAAGUUGACAAAUGUCGACUAACAAUGGAG_______GGGAAUCGCGGGGAG____GUGGAGCAUGUUUUCUAUAGCGA___AGCUCGG
......((((..((((...(((((((....))))))).....))))...........................((((((......))))))))))........... ( -9.08 = -10.44 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:00 2006