Locus 2801

Sequence ID 3R_DroMel_CAF1
Location 7,484,557 – 7,484,649
Length 92
Max. P 0.617712
window4531

overview

Window 1

Location 7,484,557 – 7,484,649
Length 92
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 80.60
Mean single sequence MFE -20.32
Consensus MFE -12.98
Energy contribution -13.02
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.617712
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7484557 92 + 27905053
CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC-----------AGCCCCUCAUCCGCCCAUGAACCA
((((((((((.........))))))))))..........((((((((.((.....)).)))((((...-----------........)))).....))))).. ( -20.50)
>DroSec_CAF1 4497 91 + 1
CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC-----------AGCC-CUCAUCCGUCCAUGAACCA
((((((((((.........))))))))))..........(((((...((..........((((((...-----------....-...)))))))).))))).. ( -21.60)
>DroEre_CAF1 4672 92 + 1
CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAAAGUGCAGUUCAGUAGGUAACACACAUUUGGAUCCC-----------AGCCCCCCAUCCGCCCAUGAACCA
((((((((((.........))))))))))..........(((((...(((.........((((...))-----------))..........)))..))))).. ( -20.11)
>DroYak_CAF1 10224 103 + 1
CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAAAGUGCAGUUCAGUAGGUAACACACAUAUGGAUCCCCUCAUCCCCUCAUCCCCUCAUCCGCCCAUGAACCA
((((((((((.........))))))))))..........(((((...((............((((......))))..............)).....))))).. ( -20.17)
>DroAna_CAF1 5389 74 + 1
CCUUGAUGACUCAAAAUCAGUCAUUAAGGCUAGACUGCAGUUCAGUGGGUAGCACACUUACAGAUCCCCC---------------------G--------GCA
(((((((((((.......)))))))))))...(.(((....((.((((((.....)))))).)).....)---------------------)--------)). ( -19.20)
>consensus
CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC___________AGCCCCUCAUCCGCCCAUGAACCA
((((((((((.........)))))))))).....(((..(((........))).))).............................................. (-12.98 = -13.02 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:59 2006