| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,083,554 – 1,083,656 |
| Length | 102 |
| Max. P | 0.677445 |
| Location | 1,083,554 – 1,083,656 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -41.73 |
| Consensus MFE | -25.07 |
| Energy contribution | -26.02 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1083554 102 + 27905053 AGCAACUGCAACAAGCUGUGGCAUCUGCCAAUCUGGAAUGCAGCGGCGCCGGCGCCAACUGCUCCACCGCCCAGAUGAUGACGCCUGCCCACCAGGCGCAGA .....((((........((.(((((((......((((..((((.((((....))))..)))))))).....)))))).).))(((((.....))))))))). ( -39.30) >DroVir_CAF1 16133 96 + 1 AGCAGCUGCAACAGGCGGUGGCUGCCACAACGCUGGAUGUGAGUGG------CGCCAAUUGUUCGACUGCCCAAAUGAUGACGCCGGCAGCUCAGGCCCAGA .((((((((....((((.((((.(((((..(((.....))).))))------)))))((..((.(......).))..))..)))).))))))...))..... ( -35.70) >DroPse_CAF1 22767 102 + 1 AACAGCUGCAGCAGGCCGUGGCAGCCACCUCCCUGGAGGGCAGUGGCGCUGGCGCCAAUUGCUCCACGGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((..((.((((((((.(((..((((....))))....(((((....)))))...)))))))))))((.....))..)).((((.....))))))). ( -45.60) >DroYak_CAF1 32202 101 + 1 -GCCACUGCCACAAGUGGUGGCAUCUGCUAAUCUGGAGGGCAGCGGCGCCGGCGCCAACUGCUCCACCGCCCAGAUGAUGACGCCUGCCCACCAGGCGCAGA -(((((..(.....)..))))).(((((..((((((.((((((.((((....))))..))))....))..))))))......(((((.....)))))))))) ( -49.00) >DroMoj_CAF1 18235 96 + 1 AACAGCUGCAGCAGGCGGUGGCAGCCACAACGCUGGAUGUUAGUGG------CGCCAAUUGCUCCACCGCUCAAAUGAUGACGACCGCCGCACAGGCUCAGA ...((((...((.(((((((((.(((((((((.....)))).))))------))))...........((.(((.....)))))))))))))...)))).... ( -35.20) >DroPer_CAF1 22392 102 + 1 AACAGCUGCAGCAGGCCGUGGCAGCCACCUCCCUGGAGGGCAGUGGCGCUGGCGCCAAUUGCUCCACGGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((..((.((((((((.(((..((((....))))....(((((....)))))...)))))))))))((.....))..)).((((.....))))))). ( -45.60) >consensus AACAGCUGCAACAGGCGGUGGCAGCCACCACCCUGGAGGGCAGUGGCGC_GGCGCCAAUUGCUCCACCGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((.....((((((((...(((......)))..((((((((((....)))).))))))))))))))..............((((.....))))))). (-25.07 = -26.02 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006