Locus 28

Sequence ID 3R_DroMel_CAF1
Location 257,282 – 257,402
Length 120
Max. P 0.521697
window46

overview

Window 6

Location 257,282 – 257,402
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.94
Mean single sequence MFE -33.33
Consensus MFE -19.73
Energy contribution -20.82
Covariance contribution 1.09
Combinations/Pair 1.33
Mean z-score -2.24
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.521697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 257282 120 + 27905053
AAGUUCCUCGCUUUCCCGCUUGGCGAUCUGCUCGGCGUCCAACUUCUUAAUGCCUUCCUCAUCCAGCUUGGAAAGCAUCUUCUUACCAUGAGCCGUCUGCGAGAUUUGCUGAACCUUCUC
..((((...((......))..((((((((((.((((.............((((.((((...........)))).)))).............))))...)).))).)))))))))...... ( -27.87)
>DroVir_CAF1 757 120 + 1
CAGCUCCUCACUCUCACGCAUCGCGAUCUGCUCAGCAUCGAGCUUUUUGAUGCCUUCCUCGUCCAGUUUGGAUAGCAUUUUCUUGCCGUGUGCAGUCUGCGAUAUUUGCUGCACCUUUUC
((((......(......).((((((..((((.((((((((((...)))))))).......((((.....)))).(((......)))..)).))))..))))))....))))......... ( -30.30)
>DroGri_CAF1 685 120 + 1
CAGCUCCUCGCUUUCACGCAUGGCAAUUUGUUCGGCAUCGAGCUUCUUGAUGCCCUCCUCAUCCAGUUUGGAGAGCAUUUUUUUGCCGUGCGCAGUUUGCGAUAUCUGCUGCACCUUCUC
((((...((((.....((((((((((..((((((((((((((...))))))))).......(((.....)))))))).....))))))))))......)))).....))))......... ( -47.10)
>DroWil_CAF1 1333 120 + 1
CAACUCUUCGUUCUCGCGCUUGGCAAUCUGCUCCGCAUCGAGUUUCUUGAUUCCCUCCUCGUCGAGCUUGGAGAGCAUCUUUUUGCCAUGGGCUGUCUGGGAAAUCUGUUGCACCUUCUC
((((......(((((((.(.((((((..(((((....((((((((..(((........)))..)))))))).))))).....)))))).).)).....)))))....))))......... ( -31.00)
>DroMoj_CAF1 1336 120 + 1
CAGCUCUUCGCUUUCACGCAUAGCAAUUUGCUCAGCAUCGAGUUUCUUGAUGCCUUCCUCAUCCAAUUUGGAAAGCAUUUUCUUGCCGUGCGCAGUCUGCGAUAUUUGCUGCACCUUCUC
((((...((((.....((((..((((..((((..((((((((...))))))))........(((.....))).)))).....))))..))))......)))).....))))......... ( -36.10)
>DroAna_CAF1 1333 120 + 1
CAACUCUUCGUUCUCCCGCUUGGCGAUCUGCUCGGCAUCCAGUUUCUUGAUACCCUCCUCGUCCAGCUUGGAAAGCAUUUUCUUUCCAUGGGCCGUCUGCGAGAUUUGCUGCACCUUCUC
.................((..((((((((((.((((..((((((...(((........)))...))).(((((((......))))))))))))))...)).))).)))))))........ ( -27.60)
>consensus
CAGCUCCUCGCUCUCACGCAUGGCAAUCUGCUCGGCAUCGAGCUUCUUGAUGCCCUCCUCAUCCAGCUUGGAAAGCAUUUUCUUGCCAUGCGCAGUCUGCGAUAUUUGCUGCACCUUCUC
((((...((((......(((((((((..((((..((((((((...)))))))).((((...........)))))))).....))))))..))).....)))).....))))......... (-19.73 = -20.82 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:42 2006