Locus 2799

Sequence ID 3R_DroMel_CAF1
Location 7,476,427 – 7,476,518
Length 91
Max. P 0.739685
window4529

overview

Window 9

Location 7,476,427 – 7,476,518
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 85.71
Mean single sequence MFE -29.73
Consensus MFE -21.38
Energy contribution -21.33
Covariance contribution -0.05
Combinations/Pair 1.13
Mean z-score -2.29
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.739685
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7476427 91 + 27905053
AGUGUGACCAGUCGGCAAUGGUGCAGUAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUUUUAUAGCUAUGUGUGCUUGUGGCUGUUU
........((((((.((((..((((....))))......)))).).(((((.((.(((((((...))))))).)).)))))..)))))... ( -28.20)
>DroSim_CAF1 2264 90 + 1
AGUGUGACCAGUCGGCCAAUGUGCAGGAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUAUUAGAGCUAUGUGUGCUUGUGGCUGUU-
........((((((((((((.((((....))))......)))))).(((((.((.(((((.......))))).)).))))).))))))..- ( -29.30)
>DroYak_CAF1 2039 91 + 1
AGUGUGACCAGUCGGCGGUGAUGCAGGAAUGCAAACGGACUAGGCGGAACAGAUCUGGCUAUUUAAUAGCUAUGUCUGUUUCUGACUGUAU
........((((((((.((..((((....)))).)).).))....(((((((((.(((((((...))))))).))))))))).)))))... ( -31.70)
>consensus
AGUGUGACCAGUCGGCAAUGGUGCAGGAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUUUUAUAGCUAUGUGUGCUUGUGGCUGUUU
........((((((.......((((....)))).............(((((.((.((((((.....)))))).)).))))).))))))... (-21.38 = -21.33 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:57 2006