Locus 2798

Sequence ID 3R_DroMel_CAF1
Location 7,475,992 – 7,476,088
Length 96
Max. P 0.559808
window4528

overview

Window 8

Location 7,475,992 – 7,476,088
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -19.97
Consensus MFE -18.23
Energy contribution -18.90
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.91
SVM decision value 0.05
SVM RNA-class probability 0.559808
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7475992 96 + 27905053
CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA
..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ ( -20.20)
>DroSim_CAF1 1830 96 + 1
CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA
..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ ( -20.20)
>DroYak_CAF1 1605 94 + 1
CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUA--UAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA
..(((((((((((.....)).....))))...)))))....................(((--((((.(((((....))))).)))))))....... ( -19.50)
>consensus
CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA
..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ (-18.23 = -18.90 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006