Locus 2797

Sequence ID 3R_DroMel_CAF1
Location 7,475,685 – 7,475,795
Length 110
Max. P 0.886889
window4527

overview

Window 7

Location 7,475,685 – 7,475,795
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -32.27
Consensus MFE -28.60
Energy contribution -28.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.89
SVM decision value 0.94
SVM RNA-class probability 0.886889
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7475685 110 + 27905053
CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAAAAAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA----------ACCAUGCAUAUG
......((.((((((((((((..(.....((.(((((((..........))))))).)).)..)))))))...((((((........).)))))....----------....))))).)) ( -30.60)
>DroSim_CAF1 1537 109 + 1
CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA-AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA----------ACCAUGCAUAUG
......((.((((((((((((..(.....((.(((((((.....-....))))))).)).)..)))))))...((((((........).)))))....----------....))))).)) ( -30.70)
>DroYak_CAF1 1291 119 + 1
CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA-AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAUGUAGUCCCGAAUAGGAGACACACAAACCAUAUG
.........((((.(((((((..(.....((.(((((((.....-....))))))).)).)..)))))))..((((((((......)).)).))))....(....))))).......... ( -35.50)
>consensus
CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA_AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA__________ACCAUGCAUAUG
...........((.(((((((..(.....((.(((((((..........))))))).)).)..))))))).))((((((........).))))).......................... (-28.60 = -28.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006