Locus 2795

Sequence ID 3R_DroMel_CAF1
Location 7,475,185 – 7,475,305
Length 120
Max. P 0.843255
window4525

overview

Window 5

Location 7,475,185 – 7,475,305
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -30.03
Consensus MFE -27.70
Energy contribution -28.37
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.92
SVM decision value 0.76
SVM RNA-class probability 0.843255
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7475185 120 - 27905053
UUACUACUGUAUUUGUUUUGACUAUUUUUGGGUCGACCAUUUGCAGCUUCUUUAUGUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA
.......(((.((((((((((((.......))))(((.....(((((.((...(((....)))...)).))))).))).((((((((....)))))))))))))))).)))......... ( -29.20)
>DroSim_CAF1 1029 120 - 1
UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA
.......(((.(((((((((((((....))))).........((((((((..(((....)))....)))))))).....((((((((....)))))))))))))))).)))......... ( -31.90)
>DroYak_CAF1 791 120 - 1
UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUUGCUUCAAAACGAAAGCAAAAUCAGAA
......(((..(((((((((((((....))))).(((((...((((((((..(((....)))....))))))))....)).)))......((((......)))).))))))))..))).. ( -29.00)
>consensus
UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA
.......(((.((((((((.........(((.....)))...((((((((..(((....)))....)))))))).....((((((((....)))))))))))))))).)))......... (-27.70 = -28.37 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:53 2006