Locus 2793

Sequence ID 3R_DroMel_CAF1
Location 7,462,779 – 7,462,872
Length 93
Max. P 0.635462
window4523

overview

Window 3

Location 7,462,779 – 7,462,872
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.56
Mean single sequence MFE -37.25
Consensus MFE -28.67
Energy contribution -27.73
Covariance contribution -0.94
Combinations/Pair 1.21
Mean z-score -1.03
Structure conservation index 0.77
SVM decision value 0.21
SVM RNA-class probability 0.635462
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7462779 93 + 27905053
----------------CGUUUCGCAUACCACAUUGUUCUCGCGAUGGUGGUGGUGGUGCGGCGGUAUGCUGGGCGGCACAAUGUGCGGCUGCGACUGGCUGAGCUGCUG
----------------(((.((((.(((((((((((....))))).)))))))))).)))(((((..((..(((.((((...)))).)).....)..))...))))).. ( -36.80)
>DroPse_CAF1 2337 104 + 1
UGGCUUUGUGG-CA-CU---CAAAUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGGGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAACUGUUG
..(((....))-).-((---((.(((((((((((((....)))))).)))))))..))))(((((..(((((((.((((...)))).)))).....)))...))))).. ( -37.50)
>DroGri_CAF1 11742 89 + 1
--------------------UGACUUACCACAUUGUUGUCGCGAUGAUGAUGAUGAUGCGGCGGUAUGCUUGGCGGCACAAUGUGCGGCUGUGAUUGGCUCAGCUGUUG
--------------------........((((((((.(((((.((.((....)).))(((......)))...)))))))))))))((((((.(.....).))))))... ( -26.30)
>DroYak_CAF1 2253 92 + 1
----------------AGU-UCGCAUACCACAUUGUUCUCGCGAUGGUGGUGGUGGUGUGGCGGUAUGCUGGGCGGCACAAUGUGCGGCUGCGAUUGGCUGAGCUGCUG
----------------(((-((((...((((((..(..((((....))))..)..))))))((((.(((..(((.((((...)))).)))))))))))).))))).... ( -34.80)
>DroAna_CAF1 2254 107 + 1
UGGCUA-GUGGCCA-CUGGGUCACCUACCACAUUGUUGUCGCGAUGGUGGUGGUGGUGCGGAGGUAUGCUCGGCGGCACAAUGUGUGGCUGCGACUGGCUGAGCUGCUG
.(((((-((.((..-..((((.((((.((.(((..(..((((....))))..)..))).))))))..))))(((.((((...)))).))))).)))))))......... ( -45.90)
>DroPer_CAF1 2344 105 + 1
UGGCUUUGGGG-CAACC---CAAAUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGGGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAACUGUUG
.....(((((.-...))---)))(((((((((((((....)))))).)))))))(((.((((.(....(.((((.((((...)))).)))).)..).)))).))).... ( -42.20)
>consensus
________________C___UCACUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGCGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAGCUGCUG
..........................((((((((((....)))))).))))((((((.(((((((.(((..(((.((((...)))).))))))))).)))).)))))). (-28.67 = -27.73 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:51 2006