Locus 2792

Sequence ID 3R_DroMel_CAF1
Location 7,458,339 – 7,458,451
Length 112
Max. P 0.557659
window4522

overview

Window 2

Location 7,458,339 – 7,458,451
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.21
Mean single sequence MFE -53.87
Consensus MFE -19.98
Energy contribution -19.32
Covariance contribution -0.66
Combinations/Pair 1.40
Mean z-score -2.10
Structure conservation index 0.37
SVM decision value 0.05
SVM RNA-class probability 0.557659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7458339 112 - 27905053
GGUAUUUAAACCCUGAUUGCUGGGCGGCGAGGCGAUUCCGCCAGCAGAUGCGCCUCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGUGCCG--GCGGUGCUCUUAGC------CGCACCA
((((.(((.....))).))))(((((((((((((..((.(....).))..))))))..........(((((((((((((((......))))--))))))))))).))------))).)). ( -56.90)
>DroPse_CAF1 14237 118 - 1
CGUGUUAACGUUCUGGCUGCUGGGCGGAGAGGCCAUGCCGCCAGCUGCCGCUCCUCCGAACGAGAAUGGAGCGUUGCCCG--GUGGUGCCGGGGCGUUGGUCUUGGUUGUUGUUCCGCCA
....(((((((((((((.(((((((((...(((...))).))......((((((.............))))))..)))))--))...)))))))))))))...((((.(.....).)))) ( -50.32)
>DroEre_CAF1 13086 112 - 1
GGUAUUUAAGCCCUGAUUACUGGGCGGCGAGGCGAUGCCGCCAGCAGAUGCGCCGCCAAAAGAGAAGGGAGCAUUGCCGGCUGUGGCGCUG--GCGGUGCUCUUAGU------GCUACCA
((((.(((((((((..((....((((((..((((....)))).((....))))))))....))..))))((((((((((((......))))--))))))))))))).------..)))). ( -56.90)
>DroYak_CAF1 12613 112 - 1
GGUAUUUAAGCCCUGAUUACUGGGCGGCGAGGCGAUGCCCCCAGCAGAUGCGCCGCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGCGCUG--GGUGUGCUCUUGGC------GCCACCA
.........((((........))))(((..((((((((.(((.((....))..((.....))....))).)))))))).)))(((((((..--((......))..))------))))).. ( -53.20)
>DroAna_CAF1 32614 115 - 1
UGUGUUCAUGCUCUGAUUGCUGGGCUGGGAAGCGAUGCCGCCAGCUGUCGCUCCGCCGAAAGAGAAUGGAGCGUUGCCGGUGGCAUUGCUG--GCUGGUGGAUUGGC---UGCUCCACCA
...(((((.((.......))))))).((..((((((((((((.((...((((((.((....).)...))))))..)).)))))))))))).--.))((((((.....---...)))))). ( -55.60)
>DroPer_CAF1 14474 118 - 1
CGUGUUAACGUUCUGGCUGCUGGGCGGAGAGGCCAUGCCGCCAGCUGCCGCUCCUCCGAACGAGAAUGGAGCGUUGCCCG--GUGGUGCCGGGGCGUUGGUCUUGGUUGUUGUUCCGCCA
....(((((((((((((.(((((((((...(((...))).))......((((((.............))))))..)))))--))...)))))))))))))...((((.(.....).)))) ( -50.32)
>consensus
GGUAUUUAAGCCCUGAUUGCUGGGCGGCGAGGCGAUGCCGCCAGCAGACGCGCCGCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGUGCCG__GCGGUGCUCUUGGC______UCCACCA
.........((((........))))((...((((.(((..((.((...(((.((.............)).)))..)).))..))).)))).............(((........))))). (-19.98 = -19.32 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:50 2006