Locus 279

Sequence ID 3R_DroMel_CAF1
Location 1,082,813 – 1,082,914
Length 101
Max. P 0.576159
window480

overview

Window 0

Location 1,082,813 – 1,082,914
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 76.91
Mean single sequence MFE -15.14
Consensus MFE -2.46
Energy contribution -3.26
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.16
SVM decision value 0.09
SVM RNA-class probability 0.576159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1082813 101 - 27905053
UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAACCGCGUAAACUGUGCAAAAAAAGGGAAAAAUUCUUAACUCAGCACUAAAAUUUCUU
......((((...((..((.(..((((((.....((((....)))).))))))...).))..))..))))............................... ( -14.10)
>DroSec_CAF1 18298 100 - 1
UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA-AAUUCUUAACUCAGCACUAAAAUUUUUA
......((((...((..((.(..((((((.....((((.....))))))))))...).))..))..))))..-............................ ( -14.10)
>DroSim_CAF1 18506 100 - 1
UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA-AAUUCUUAACUCAGCACUAAAAUUUCUA
......((((...((..((.(..((((((.....((((.....))))))))))...).))..))..))))..-............................ ( -14.10)
>DroEre_CAF1 20241 86 - 1
UUAAUCCCCUGA-----GCUCGAUCAUCCCAUUUUUUAAUAAAAAA-------ACUGUU-A-AAAAAUGGAA-AAUUCUUAGCUCAGCACUAAAAUUUCUA
........((((-----(((.((.....(((((((((((((.....-------..))))-)-))))))))..-...))..))))))).............. ( -22.00)
>DroYak_CAF1 31507 89 - 1
UUAAUGCUUUGU-----CUUGGACUA---CAAUUGAUAAAAAAGAAAGCGC--ACUGUGCA-GAAAAGGGAG-AAUUCUUAGCUCAGCAAUAAAAUUUAUA
(((.((((((((-----((((.....---)))..))))))......(((((--.....)).-.......(((-....))).)))..))).)))........ ( -11.40)
>consensus
UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA_AAUUCUUAACUCAGCACUAAAAUUUCUA
........................................................((((......(((((....)))))......))))........... ( -2.46 =  -3.26 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006