Locus 2787

Sequence ID 3R_DroMel_CAF1
Location 7,452,854 – 7,452,951
Length 97
Max. P 0.750695
window4514

overview

Window 4

Location 7,452,854 – 7,452,951
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -29.45
Consensus MFE -20.42
Energy contribution -20.20
Covariance contribution -0.22
Combinations/Pair 1.30
Mean z-score -1.37
Structure conservation index 0.69
SVM decision value 0.47
SVM RNA-class probability 0.750695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7452854 97 - 27905053
CUUGGUUCAAGUCAAGCGUGCAGCAGGCGCAUAUGCUGCUGGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGAAAAUGCUGCACAAAUCAAAU---
(((((......))))).(((((((((((((....)).)))..(((((((((.(....).)))))))))............)))))))).........--- ( -36.50)
>DroVir_CAF1 25618 94 - 1
CUUGUUUCAGGUCAAGAAGACAGCAAGCGCAUAUGUGGGAUGGCAGCUCGGGACUGCUUACCAGCUGUAAGCAAUGCAA--AUAUUACAAUU-GUUU---
((((........))))...(((((...(((....)))((..((((((....).)))))..)).)))))(((((((....--........)))-))))--- ( -22.10)
>DroSec_CAF1 6688 97 - 1
CUUGGUUCAAGUCGAGCGUGCAGCAGGCGCAUAUGCUGCUCGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGUUAAUGUUGCACAAAUCAAAU---
.(((((((.....))))(((((((((((((....)).)))..(((((((((.(....).)))))))))............))))))))....)))..--- ( -34.80)
>DroSim_CAF1 6701 97 - 1
CUUGGUUCAAGUCGAGCGUGCAGCAGGCGCAUAUGCUGCUCGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGUAAAUGUUUCACAAAUCAAAU---
.((((((...((.((((((((((((........))))))...(((((((((.(....).)))))))))...........)))))).)).))))))..--- ( -32.10)
>DroEre_CAF1 6920 100 - 1
CUUGGUUCAAGUCCAGCGUACAGCAGGCGCAUAUGCAGCUGGGCAGCUUUGGAUCAUUGUGGAGCUGCAAUCACAGAAUAUCUUACACAAUACACACAGA
...(((((((((((((((((..((....))...))).)))))))....)))))))((((((((.(((......)))....))...))))))......... ( -25.80)
>DroYak_CAF1 6888 100 - 1
CUUGGUUCAAGUCCAGCGUACAGCAGGCGCAUAUGCAGCUGGGCAGGUCUGGAUCAUUGUGGAGCUGCAAUCACAGAAUAAUUUUCACAAUAUACAUUGA
...((((((.((((((((((..((....))...))).))))))).....))))))((((((((((((......)))......)))))))))......... ( -25.40)
>consensus
CUUGGUUCAAGUCAAGCGUACAGCAGGCGCAUAUGCUGCUGGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGAAAAUGUUUCACAAAUCAAAU___
..(((((.....(((((.....(((........))).)))))(((((((((.(....).))))))))))))))........................... (-20.42 = -20.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006