Locus 2786

Sequence ID 3R_DroMel_CAF1
Location 7,452,649 – 7,452,753
Length 104
Max. P 0.612759
window4513

overview

Window 3

Location 7,452,649 – 7,452,753
Length 104
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 75.90
Mean single sequence MFE -28.05
Consensus MFE -12.32
Energy contribution -12.60
Covariance contribution 0.28
Combinations/Pair 1.35
Mean z-score -1.99
Structure conservation index 0.44
SVM decision value 0.16
SVM RNA-class probability 0.612759
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7452649 104 + 27905053
AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGGCU--AAACUUCGGUUGAUUUUCAACU---AACAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA
...((((..........(((...((((((((((.....--.))))))))))....)))....---.......((((((....))))))))))(((....)))....... ( -29.10)
>DroPse_CAF1 7969 108 + 1
GAUUUUAGUUUGU-UUUGAAUAAAAAUGUAUUUUAUUUUUCAUAUUUUACGUGCUAGAAACGAGAUUUAAAAUGACGCUGCAAUGCCGAGCCUGCGGGGGCGUCAUCUA
..(((((((.(((-...(((((((((((.....))))))...))))).))).)))))))............((((((((.(...((.......)).).))))))))... ( -22.50)
>DroSec_CAF1 6475 104 + 1
AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGUCU--AAACUUCGGUUUGUUUCCAACA---AAUAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA
...((((..........(((.((((((((((((.....--.)))))))))))).))).....---.......((((((....))))))))))(((....)))....... ( -30.70)
>DroSim_CAF1 6488 104 + 1
AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGUCU--AAACUUCGGUUUGUUUCCAACA---AACAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA
...((((((((......(((.((((((((((((.....--.)))))))))))).)))....)---)))....((((((....))))))))))(((....)))....... ( -31.10)
>DroEre_CAF1 6709 104 + 1
AUUGAUUGUUUAUUUUCGAAUUAAGCGGAAGUUUGGGU--AAACUUCGGUUAAAUUUCCACA---AUCAUAAUGCCACUUCAAUGCCGCACCUGCGGAAGCAUCAUCUA
..(((((((........(((((.(((.(((((((....--))))))).))).)))))..)))---))))..((((..........((((....))))..))))...... ( -22.40)
>DroYak_CAF1 6677 104 + 1
AUUGAUUGUUUAUAUUCGAACUUAGCUAAAGUUGGGGU--AAGCUUUGGUUUAUUUUGAACU---AACAUAAUGACGCUUCAAUGCCGCACCUGCGGAAGCGUCAUCUA
......((((....((((((...((((((((((.....--.))))))))))...))))))..---))))..(((((((((.....((((....)))))))))))))... ( -32.50)
>consensus
AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGGCU__AAACUUCGGUUUAUUUUCAACA___AACAUAAUGGCGCUCCAAUGCCGGACCUGCGGCAGCAUCAUCUA
.......................((((((((((........))))))))))....................((((.(((......(((......))).))).))))... (-12.32 = -12.60 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006