| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,447,209 – 7,447,304 |
| Length | 95 |
| Max. P | 0.607227 |
| Location | 7,447,209 – 7,447,304 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -12.79 |
| Energy contribution | -13.10 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7447209 95 + 27905053 UU------UUUAUUAAUAAUUU-GAACUUUUCAGCUGUGGUAUCUGUUGCAAGUCAUUCACUCUGCUGCACCAGCUGAAAGCUCACCUGCAAACGCUAACCC ..------..............-.....(((((((((.(.....(((.((((((.....))).))).)))))))))))))((......))............ ( -18.30) >DroVir_CAF1 20401 99 + 1 UAUGUCAAUUUCUUAAUAUUCUU---AUUUGCAGCUGCAACAUUUGCUCCAAGUCAUUUACAUUGCUGCACCAGUUGAAGGCACAUCUGCAGACGCUGACGC ...((((................---...((((((.(((.....))).....((.....))...))))))...(((....(((....))).)))..)))).. ( -17.70) >DroSec_CAF1 1087 95 + 1 UU------UUUAUUAAUAAUUU-GAACUUUUCAGCUGCGGUAUCUGCUGCAAGUCAUUCACUCUGCUGCACCAGCUGAAAGCUCACAUGCAAACGCUAACCC ..------..............-.....(((((((((.(.....(((.((((((.....))).))).)))))))))))))((......))............ ( -19.90) >DroSim_CAF1 1085 95 + 1 UU------UUUAUUAAUAAUUU-GAACUUUUCAGCUGCGGUAUCUGCUGCAAGUCAUUCACUCUGCUGCACCAGCUGAAAGCUCACAUGCAAACGCUAACCC ..------..............-.....(((((((((.(.....(((.((((((.....))).))).)))))))))))))((......))............ ( -19.90) >DroEre_CAF1 1089 95 + 1 UC------AUUACUAAUGAUUU-AAAUAUUUUAGCUGUGACAUUUGCUGCAAGGGAUUUACCCUGCUGCACCAGCUGAAAGCUCACCUACAAACGCUCACAC ((------((.....))))...-.....(((((((((.(.....(((.(((.(((.....)))))).)))))))))))))...................... ( -20.80) >DroYak_CAF1 1088 95 + 1 UC------AUUACUAAUAAUUU-AAACCUUUCAGCUGCGACAUUUGCUGCAAGUCAUUCACCCUGCUGCACCAGCUAAAAGCUCACAUGCAAACGCUCACCC ..------..............-....((((.(((((.(.....(((.(((.(........).))).))))))))).)))).......((....))...... ( -13.00) >consensus UU______UUUAUUAAUAAUUU_GAACUUUUCAGCUGCGACAUCUGCUGCAAGUCAUUCACUCUGCUGCACCAGCUGAAAGCUCACAUGCAAACGCUAACCC ............................(((((((((.(.....(((.(((............))).)))))))))))))((......))............ (-12.79 = -13.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006