Locus 2783

Sequence ID 3R_DroMel_CAF1
Location 7,443,656 – 7,443,762
Length 106
Max. P 0.844985
window4510

overview

Window 0

Location 7,443,656 – 7,443,762
Length 106
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 92.26
Mean single sequence MFE -34.01
Consensus MFE -28.81
Energy contribution -29.12
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.85
SVM decision value 0.77
SVM RNA-class probability 0.844985
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7443656 106 + 27905053
ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCCGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGAAGAUCGCGUGA
.(((((..(((((((((((............((((((((((--------..........)))).)))))).)))))...))))))..-....((---(....))).......))))). ( -30.42)
>DroSec_CAF1 26338 106 + 1
ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCUGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGCAGAUCGCGUGA
.(((((.((.(((....(((...((((....((((((((((--------..........)))).)))))).....(((.........-)))...---))))))).))).)).))))). ( -33.60)
>DroSim_CAF1 24981 106 + 1
ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCUGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGCAGAUCGCGUGA
.(((((.((.(((....(((...((((....((((((((((--------..........)))).)))))).....(((.........-)))...---))))))).))).)).))))). ( -33.60)
>DroYak_CAF1 27133 118 + 1
ACAUGCAAUGUGUCCCGGGUUCAAUGCACUUGCCACUCAGCCACUCAGCCUCAAACUUCGCUGCAGUGGCUCUUGGCCAGAUACACAAGGCAUACAGGAAUACUAGCAGAUCGCGUGA
.(((((.((.(((.....((((.((((.((.((((...(((((((((((..........)))).)))))))..)))).))...(....)))))....))))....))).)).))))). ( -38.40)
>consensus
ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC________CUCAAACUCCGCUGCAGUGGCUCUUGGCCAGAUACACA_GGCAUA___GCAUACUAGCAGAUCGCGUGA
.(((((.((.(((....(((...((((....((((((((((..................)))).)))))).....(((..........)))......))))))).))).)).))))). (-28.81 = -29.12 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:38 2006