Locus 2781

Sequence ID 3R_DroMel_CAF1
Location 7,440,175 – 7,440,276
Length 101
Max. P 0.533132
window4508

overview

Window 8

Location 7,440,175 – 7,440,276
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -30.70
Consensus MFE -23.36
Energy contribution -23.12
Covariance contribution -0.24
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.76
SVM decision value -0.00
SVM RNA-class probability 0.533132
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7440175 101 - 27905053
UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAAUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA
..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..(((((((((....)))))))))..)).))))))))))..... ( -31.50)
>DroSec_CAF1 22888 101 - 1
UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCAAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA
..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..((((((..........))))))..)).))))))))))..... ( -26.20)
>DroSim_CAF1 21572 101 - 1
UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA
..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..(((((((((....)))))))))..)).))))))))))..... ( -31.50)
>DroEre_CAF1 23034 101 - 1
UAUUAUUUAAAUGAUGAGAUAUAGCGUGUGUAGUGC-----GCGUUCGUUUCUGGAGC--UUGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUAGCGAUA
..((((((((((...(((((..(((((((.....))-----))))).)))))...(((--..(((...(((((((....)))))))))).)))))))))))))..... ( -30.30)
>DroYak_CAF1 23662 108 - 1
UAUUAUUUAAAUGCUGAGAUAUAGUGUGUGUAGUGCGCUGCGCGUUCGUUUCUGGGGCUCUCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUAGCGAUA
..((((((((((.((.(((....(..(((((((....)))))))..)...))).))......((..(((((((((....)))))))))..)).))))))))))..... ( -34.00)
>consensus
UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC_____ACGUUCGUUUCUGGGGC__UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA
..((((((((((.((.(((....(((..(((..........)))..))).))).))......((..(((((((((....)))))))))..)).))))))))))..... (-23.36 = -23.12 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:36 2006