Locus 278

Sequence ID 3R_DroMel_CAF1
Location 1,078,965 – 1,079,070
Length 105
Max. P 0.644374
window479

overview

Window 9

Location 1,078,965 – 1,079,070
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 93.25
Mean single sequence MFE -31.85
Consensus MFE -30.15
Energy contribution -29.18
Covariance contribution -0.97
Combinations/Pair 1.26
Mean z-score -0.94
Structure conservation index 0.95
SVM decision value 0.23
SVM RNA-class probability 0.644374
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1078965 105 + 27905053
CAGCCCUUGCGGUUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACUUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
..(((.(((((((..((((..((...(((.(((.......)))..)))...--)).))))..)))..))))..)))((((.....((....)))))).......... ( -33.80)
>DroSec_CAF1 14474 105 + 1
UAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
......(((((....))))).....(((((((((...(((((.(((((...--...))).)).)))))....(((.....)))...))))..))))).......... ( -30.70)
>DroSim_CAF1 14677 105 + 1
CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
......(((((....))))).....(((((((((...(((((.(((((...--...))).)).)))))....(((.....)))...))))..))))).......... ( -30.70)
>DroEre_CAF1 16384 105 + 1
CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCUGAAAUCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
..(((.(..((((((((((.......))).((((....))))........)--)))).))..)...)))...((.(((((.....((....)))))))....))... ( -28.90)
>DroYak_CAF1 27210 105 + 1
CAGCCCUUGCGACUGCGCAGACGAAGUGCAUUCGAAACCAGGACAGCAAUG--UGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
..(((....(((.(((((.......))))).)))...(((((.(((((...--...))).)).))))).....)))((((.....((....)))))).......... ( -30.30)
>DroAna_CAF1 14713 107 + 1
AAGUUUCUGCGGCUGCGCGGAUGAAGUGCAUCCGAAACCAGGACAGCGCCGCACAGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
..(((((((((....))))))....(((((((((...(((((.((((((......)))).)).)))))....(((.....)))...))))..)))))...))).... ( -36.70)
>consensus
CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG__CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC
......(((((....))))).....(((((((((...(((((.(((((........))).)).)))))....(((.....)))...))))..))))).......... (-30.15 = -29.18 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:20 2006