Locus 2776

Sequence ID 3R_DroMel_CAF1
Location 7,431,888 – 7,431,995
Length 107
Max. P 0.912831
window4501

overview

Window 1

Location 7,431,888 – 7,431,995
Length 107
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 94.78
Mean single sequence MFE -48.20
Consensus MFE -45.55
Energy contribution -45.55
Covariance contribution 0.00
Combinations/Pair 1.03
Mean z-score -1.86
Structure conservation index 0.95
SVM decision value 1.09
SVM RNA-class probability 0.912831
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7431888 107 + 27905053
---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUAGCUACCCACUGAGCGGUGCACGGGUUGCCAGAGGUGGUGCGGGCAUUCGGCGGAGUGG
---.(..((((..((((...((((....((((.(((((((((.((.......)).)))))))))..))))..((.(..(((...)))..).))))))..))))))))..) ( -44.90)
>DroSec_CAF1 14742 107 + 1
---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUUGGCGGAGUGG
---.(..((((...((((...((......(((.(((((((((((..(...)..)))))))))))..)))))))))...(((((((((.......)))))))))))))..) ( -50.10)
>DroSim_CAF1 13355 107 + 1
---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUCGGCGGAGUGG
---.(..((((..((((....(((....((((.(((((((((((..(...)..)))))))))))..))))..((.(..(((...)))..).)))))...))))))))..) ( -48.60)
>DroEre_CAF1 14685 110 + 1
CUCGCUGCUUCUAGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCGAUGGGUGGUGCGGGCCUUUGGCGGAGUGG
(((.((((..(((.(((((..(((....((((.(((((((((((..(...)..)))))))))))..))))....)))...))))).))).))))(((...))).)))... ( -49.20)
>consensus
___GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUCGGCGGAGUGG
....(..((((..((((....(((....((((.((((((((((((.......))))))))))))..))))..((.(..((.....))..).)))))...))))))))..) (-45.55 = -45.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:30 2006