Locus 2774

Sequence ID 3R_DroMel_CAF1
Location 7,429,331 – 7,429,435
Length 104
Max. P 0.855244
window4498

overview

Window 8

Location 7,429,331 – 7,429,435
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.20
Mean single sequence MFE -24.82
Consensus MFE -6.30
Energy contribution -7.98
Covariance contribution 1.68
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.25
SVM decision value 0.80
SVM RNA-class probability 0.855244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7429331 104 - 27905053
GUUCUCA---------------UGUAAAUCAUUAC-AGCUAGGACAAUCAAUAUAUUCUGUAUUUGUUUAAAAAUCUGUGUAUCAUAAUAACGUAACUUACACGAUGUUACUCAAUGUGU
(((((..---------------(((((....))))-)...))))).....(((((((..(((...........(((.(((((................))))))))..)))..))))))) ( -14.91)
>DroSec_CAF1 12233 114 - 1
AUUUACACAUUGUGUGAUAUUUUGUAAAGCAUUAC-AGCUAGGACAAU----AAAUUCUGUAUUUGUUUAA-AACCUGUGUAUUAUAAUAACGUAAUUCACUUGAUGUUACUCAAUGUGU
....((((((((.((((((((.....(((((.(((-((..........----.....)))))..)))))..-.....(((.(((((......))))).)))..)))))))).)))))))) ( -26.36)
>DroSim_CAF1 11183 115 - 1
AUUUACACAUUGUGUGAUAUUUUGUAAAGCAUUAC-AGCUAGGACAAU----AAAUUCUGUAUUUGUUUAAAAACCUGUGUAUUAUAAUAACGUAAUUCACUUGAUGUUACUCAAUGUGU
....((((((((.((((((((.....(((((.(((-((..........----.....)))))..)))))........(((.(((((......))))).)))..)))))))).)))))))) ( -26.36)
>DroEre_CAF1 12171 119 - 1
AAUUACACAUUGACUGCUAUCGUGUAAAGCAUUAU-GGAAAGGCCAAUCAAAAUAUUCUGUACUUGUUUUGUCAUUUGGGCAUUAUCAAAACGUCAACUGUGAAAUGUUACUCAAUGUGU
....(((((((((.((((...((((((((((.(((-((((...............)))))))..))))))).)))...))))..........((.(((........)))))))))))))) ( -25.06)
>DroYak_CAF1 12644 120 - 1
AAUGACACAUUGUCGGCUAUCAUGAAUAGCCUUAUAGGCUAGGCCAAUCAAAAUAUUCUGUAUUUGUUUUGAAAUCUGGGUAUUAUCAUAAUGUUAGUUGUGAAAUGUUACUCAAUGUGU
....(((((((...((((........(((((.....)))))))))..((((((((.........)))))))).....(((((...(((((((....))))))).....)))))))))))) ( -31.40)
>consensus
AUUUACACAUUGUCUGAUAUCUUGUAAAGCAUUAC_AGCUAGGACAAUCAA_AUAUUCUGUAUUUGUUUAAAAAUCUGUGUAUUAUAAUAACGUAAUUUACGAGAUGUUACUCAAUGUGU
....((((((((................((((.........((((((................))))))........)))).......((((((..........))))))..)))))))) ( -6.30 =  -7.98 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:27 2006