Locus 2773

Sequence ID 3R_DroMel_CAF1
Location 7,428,280 – 7,428,386
Length 106
Max. P 0.500000
window4497

overview

Window 7

Location 7,428,280 – 7,428,386
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -20.75
Consensus MFE -13.62
Energy contribution -13.62
Covariance contribution 0.00
Combinations/Pair 1.20
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7428280 106 + 27905053
UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUGCAUAACCAA-UGUUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUCA
.(((((((.....(((...(((((((((.((((........-(((.......)))......)))).)))))))))(((((........))))-)..)))..))))))) ( -21.34)
>DroSec_CAF1 11213 106 + 1
UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA-UGCUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUUA
.(((((((.....(((.((((((((..((.(((((((....-(((((...(....)...)))))....))))))).))...)))).....))-)).)))..))))))) ( -19.20)
>DroSim_CAF1 10174 106 + 1
UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA-UGCUUUUAGUAUCCCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUUA
.(((((((.....(((.((((((((..((.(((((((((((-((............))))))......))))))).))...)))).....))-)).)))..))))))) ( -19.00)
>DroEre_CAF1 11130 104 + 1
UUGAAGCCGAAAU-GAAAUUUAAGAAAAAUCCCAUGGACUA-UGCUUUUAGUACACCAUAGGCGGCUAUUAUUAAUUUUAGUAUGCCAUCAA-AAAUCAUUGGCU-AA
....((((((..(-((..............((.((((((((-......))))...)))).)).((((((((.......))))).))).....-...)))))))))-.. ( -22.30)
>DroYak_CAF1 11582 108 + 1
UUAGAGCUGAAAUUGAAUUUUGAGAAAAACUUCAUGGCCUAAUACUUUCAGUACACCAUAGGCGGCUAUUAUUAAGUUUAGUAUGCCAUAAAAAAAUCAUAAGCUCCA
...(((((.....(((.((((...............(((((.(((.....))).....)))))((((((((.......))))).)))....)))).)))..))))).. ( -21.90)
>consensus
UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA_UGCUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA_AAAUCAUAAGCUUCA
.(((((((...................................((((...(....)...))))((((((((.......))))).)))..............))))))) (-13.62 = -13.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:26 2006