| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,420,893 – 7,420,986 |
| Length | 93 |
| Max. P | 0.554385 |
| Location | 7,420,893 – 7,420,986 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.42 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -15.99 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7420893 93 + 27905053 AAUUACGCCCGAUUGCUGUUGGCCUAAACAAAGCGUUAGGCUCAAAAAAAAAAAGCUGCGGCUAAAAUGUGUGGAGCGCCACAAACAAUGAGC ......(((.(...(((.(((((((((........)))))).)))........)))..)))).......(((((....))))).......... ( -21.30) >DroSec_CAF1 3884 78 + 1 AAUUACGCCCGAUUACUGUUGGCCUAAACAAAGCGUUAGGCUAAAAA-AA--------------AAAUGUGUGGAGCGCCACAAACAAUGAGC ......((.((.......(((((((((........)))))))))...-..--------------.....(((((....))))).....)).)) ( -16.90) >DroSim_CAF1 2841 79 + 1 AAUUACGGCCGAUUACUGUUGGCCUAAACAAAGCGUUAGGCUAAAAAAAA--------------AAAUGUGUGGAGCGCCACAAACAAUGAGC ......(((((((....))))))).......(((.....)))........--------------.....(((((....))))).......... ( -18.70) >consensus AAUUACGCCCGAUUACUGUUGGCCUAAACAAAGCGUUAGGCUAAAAAAAA______________AAAUGUGUGGAGCGCCACAAACAAUGAGC ............(((.(((((((((((........)))))))...........................(((((....))))))))).))).. (-15.99 = -15.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006